Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 3.1e-119 431.8 212 100.0
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 1.2e-86 323.6 188 88.8
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 5.8e-86 321.2 188 88.3
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 1.2e-78 297.0 187 84.0
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 1.1e-76 290.4 189 82.0
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 5.1e-74 281.6 188 77.7
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 6.5e-69 264.6 187 73.8
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.6e-67 260.0 177 76.3
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 1.0e-66 257.3 196 68.9
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 4.3e-65 251.9 194 71.1
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 5.7e-65 251.5 196 70.9
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 5.7e-65 251.5 192 68.2
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 5.7e-65 251.5 187 70.6
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.6e-64 250.0 192 68.2
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.8e-64 249.2 186 70.4
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 6.2e-64 248.1 195 67.7
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.1e-63 247.3 190 68.9
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 1.4e-63 246.9 194 68.0
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.4e-63 246.9 192 67.2
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 2.4e-63 246.1 195 67.2
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 7.6e-62 241.1 190 66.8
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 7.6e-62 241.1 190 66.8
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 1.3e-61 240.4 187 68.4
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 1.7e-61 240.0 183 69.4
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 2.2e-61 239.6 175 68.6
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 5.0e-61 238.4 188 67.0
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.5e-60 236.1 190 65.8
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 4.2e-60 235.3 190 66.8
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 9.3e-60 234.2 196 63.8
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.2e-59 233.8 193 65.3
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 2.7e-59 232.6 190 67.4
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 2.7e-59 232.6 187 66.3
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 1.8e-58 229.9 176 68.8
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 3.9e-58 228.8 194 64.4
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 8.7e-58 227.6 188 63.8
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.5e-57 226.9 178 69.1
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 2.5e-57 226.1 188 66.5
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 7.4e-57 224.6 189 63.0
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 9.7e-57 224.2 174 64.9
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 9.7e-57 224.2 193 64.2
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 9.7e-57 224.2 178 65.7
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 1.3e-56 223.8 175 65.7
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.6e-56 223.4 188 62.2
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.2e-56 223.0 200 61.5
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.8e-56 222.6 200 60.5
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.8e-56 222.6 200 60.5
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 4.8e-56 221.9 200 61.0
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 4.8e-56 221.9 166 66.3
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 4.8e-56 221.9 170 68.2
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 8.2e-56 221.1 186 65.6
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 1.4e-55 220.3 192 61.5
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.4e-55 220.3 193 63.2
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 9.0e-55 217.6 194 60.3
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 9.0e-55 217.6 174 66.7
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 9.0e-55 217.6 191 64.4
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 1.2e-54 217.2 192 60.9
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 1.5e-54 216.9 170 64.7
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.6e-54 216.1 173 65.9
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 3.4e-54 215.7 194 59.8
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 3.4e-54 215.7 182 64.3
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 4.5e-54 215.3 181 64.6
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 5.9e-54 214.9 194 59.3
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 5.9e-54 214.9 190 61.6
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 5.9e-54 214.9 179 64.8
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 5.9e-54 214.9 177 65.0
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 7.7e-54 214.5 186 62.9
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 1.3e-53 213.8 195 61.0
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 1.7e-53 213.4 189 60.3
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 2.9e-53 212.6 190 61.1
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 2.9e-53 212.6 196 60.7
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 1.9e-52 209.9 196 58.7
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.9e-52 209.9 194 59.8
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 4.2e-52 208.8 206 58.3
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 5.5e-52 208.4 213 57.7
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 5.5e-52 208.4 195 59.0
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 9.4e-52 207.6 182 60.4
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 9.4e-52 207.6 188 61.7
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.6e-51 206.8 177 65.0
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 1.6e-51 206.8 177 63.3
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 4.6e-51 205.3 132 79.5
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.0e-50 204.1 187 60.4
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 2.3e-50 203.0 186 60.2
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 3.0e-50 202.6 181 57.5
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 6.7e-50 201.4 178 61.8
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 1.1e-49 200.7 189 57.7
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 2.5e-49 199.5 182 59.3
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 2.5e-49 199.5 177 59.3
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 4.3e-49 198.7 191 58.1
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 5.7e-49 198.4 178 61.2
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 5.7e-49 198.4 182 59.3
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 5.7e-49 198.4 182 59.3
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.3e-48 197.2 197 56.3
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.7e-48 196.8 164 63.4
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 3.7e-48 195.7 196 58.2
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 6.3e-48 194.9 181 61.9
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 8.2e-48 194.5 199 55.8
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.1e-47 194.1 179 55.3
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.1e-47 194.1 172 57.6
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 1.1e-47 194.1 191 57.6
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 1.1e-47 194.1 186 58.6
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.8e-47 193.4 177 57.1
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 9.1e-47 191.0 171 58.5
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 1.2e-46 190.7 185 56.8
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 1.0e-45 187.6 185 54.1
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 2.2e-45 186.4 183 56.8
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 6.5e-45 184.9 178 53.9
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 1.9e-44 183.3 191 54.5
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 3.2e-44 182.6 183 53.0
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 4.2e-44 182.2 187 54.5
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 7.2e-44 181.4 176 56.8
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 1.6e-43 180.3 189 55.0
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 2.7e-43 179.5 161 60.2
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 1.8e-42 176.8 181 53.6
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 5.1e-42 175.3 181 53.0
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 5.1e-42 175.3 187 57.2
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 1.5e-41 173.7 169 53.8
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 3.3e-41 172.6 191 52.9
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 5.7e-41 171.8 186 50.0
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.7e-40 170.2 126 68.3
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 2.8e-40 169.5 195 49.2
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 4.8e-40 168.7 206 50.5
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 3.1e-39 166.0 171 50.9
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 9.1e-39 164.5 191 53.4
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 3.5e-38 162.5 105 76.2
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 4.5e-38 162.2 177 50.3
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 1.5e-36 157.1 173 49.7
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 1.6e-35 153.7 123 65.9
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.1e-31 141.0 153 54.9
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 2.0e-30 136.7 86 75.6
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 2.2e-29 133.3 122 57.4
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.5e-28 130.6 198 43.4
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 1.9e-28 130.2 90 71.1
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 2.2e-24 116.7 117 55.6
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 3.7e-24 115.9 131 47.3
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 8.3e-24 114.8 164 43.3
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 3.4e-17 92.8 99 54.5
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 9.8e-17 91.3 81 55.6
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 1.3e-16 90.9 158 39.2
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 2.2e-16 90.1 61 72.1
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 4.5e-14 82.4 247 31.6
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.3e-12 75.9 93 49.5
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.0e-10 71.2 111 45.9
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 6.8e-10 68.6 99 50.5
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.2e-09 67.8 226 32.3
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 4.1e-07 59.3 117 35.9


User provided reference genes

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