Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 0.0e+00 1115.9 560 100.0
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 0.0e+00 1085.9 560 97.1
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.2e-308 1062.4 560 94.8
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 4.8e-305 1050.4 537 97.6
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.8e-304 1048.5 576 91.7
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.9e-302 1041.2 560 93.0
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 7.9e-284 979.9 515 93.2
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.7e-268 928.3 560 81.1
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.4e-264 916.0 558 80.1
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 1.8e-264 915.6 558 79.4
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.4e-264 915.2 558 80.3
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 9.1e-264 913.3 560 80.2
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.7e-263 911.8 558 79.9
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.5e-263 911.4 560 79.6
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 5.9e-263 910.6 558 79.9
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 2.2e-262 908.7 560 78.6
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 2.2e-262 908.7 560 79.3
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 2.9e-262 908.3 560 79.6
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 3.8e-262 907.9 558 79.7
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 5.0e-262 907.5 558 79.2
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.5e-261 906.0 558 78.5
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.2e-260 902.9 556 78.1
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 3.6e-260 901.4 560 78.8
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 3.6e-260 901.4 555 78.0
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 4.7e-260 901.0 560 79.3
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 6.1e-260 900.6 558 78.1
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 1.4e-259 899.4 557 77.4
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 3.0e-259 898.3 558 77.2
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 3.0e-259 898.3 558 77.4
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 3.0e-259 898.3 558 77.8
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 4.0e-259 897.9 558 77.2
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 5.2e-259 897.5 560 78.9
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 5.2e-259 897.5 553 78.7
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 1.5e-258 896.0 558 78.3
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 3.4e-258 894.8 558 77.6
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 3.4e-258 894.8 560 77.7
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 7.5e-258 893.6 553 76.9
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 2.2e-257 892.1 579 75.8
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.2e-257 892.1 556 78.1
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 2.8e-257 891.7 566 77.6
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 2.8e-257 891.7 556 77.7
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 3.7e-257 891.3 559 76.9
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 8.3e-257 890.2 560 78.2
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 8.3e-257 890.2 558 77.2
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 1.8e-256 889.0 542 79.9
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 4.1e-256 887.9 558 76.7
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 7.0e-256 887.1 560 76.4
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 9.2e-256 886.7 558 77.2
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 1.6e-255 885.9 559 76.7
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 3.8e-254 881.3 558 76.2
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 8.6e-254 880.2 558 75.6
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 8.6e-254 880.2 559 76.4
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 2.5e-253 878.6 560 77.0
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 5.6e-253 877.5 553 77.2
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 2.1e-252 875.5 556 76.6
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 2.1e-252 875.5 533 81.4
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 2.1e-252 875.5 553 75.4
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 3.6e-252 874.8 528 81.4
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 4.7e-252 874.4 576 74.0
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.0e-251 873.2 558 75.3
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.4e-251 872.8 558 76.7
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.3e-251 872.1 560 76.2
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.3e-251 872.1 560 76.2
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.3e-251 872.1 560 76.2
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 8.9e-251 870.2 585 72.8
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.5e-250 869.4 558 75.8
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 3.4e-250 868.2 559 75.7
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 4.4e-250 867.8 560 76.6
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 4.4e-250 867.8 560 75.2
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 7.5e-250 867.1 560 76.2
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 7.5e-250 867.1 558 76.7
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.3e-249 866.3 555 76.0
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 2.2e-249 865.5 560 76.2
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.4e-248 862.8 558 73.7
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 5.4e-248 860.9 553 76.9
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 7.0e-248 860.5 558 75.1
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-247 859.8 565 74.9
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.2e-247 859.8 558 75.4
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.0e-247 859.0 538 76.6
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 4.6e-247 857.8 543 75.7
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.0e-246 856.7 558 75.8
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 2.3e-246 855.5 560 74.6
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 2.3e-246 855.5 560 74.8
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 1.1e-245 853.2 560 74.1
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 5.6e-245 850.9 564 74.6
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.2e-244 849.7 560 74.8
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 3.1e-243 845.1 559 73.7
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 2.0e-242 842.4 566 73.7
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 4.4e-242 841.3 573 73.3
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 4.4e-242 841.3 566 73.5
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 2.9e-241 838.6 578 72.1
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 8.3e-241 837.0 561 72.9
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.1e-240 836.6 550 73.5
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 9.2e-240 833.6 561 72.7
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 2.0e-239 832.4 557 72.4
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.3e-238 829.7 553 72.3
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 4.3e-237 824.7 561 71.8
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 5.6e-237 824.3 561 71.1
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 3.6e-236 821.6 554 72.4
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 5.2e-235 817.8 601 68.7
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.4e-232 809.7 562 70.6
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.4e-232 808.9 601 68.6
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 2.4e-232 808.9 566 71.7
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 3.3e-229 798.5 543 72.2
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 1.1e-227 793.5 561 69.7
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.8e-227 792.7 563 69.6
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 4.0e-227 791.6 555 69.5
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 6.8e-227 790.8 557 72.5
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 6.0e-223 777.7 489 76.1
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 5.1e-222 774.6 548 68.4
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 5.1e-222 774.6 491 75.4
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 4.7e-220 768.1 558 69.2
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 7.6e-218 760.8 558 66.3
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.4e-217 757.7 563 67.7
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.9e-213 746.1 546 69.0
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 6.2e-212 741.1 559 64.6
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.8e-206 723.0 546 67.6
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 3.9e-206 721.8 549 62.7
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 8.1e-204 714.1 448 77.0
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.8e-196 688.3 566 62.9
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.0e-182 644.0 551 56.3
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 6.7e-182 641.3 546 58.2
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.7e-177 626.7 433 71.8
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 6.5e-177 624.8 392 76.0
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.2e-175 620.5 392 77.6
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 1.5e-173 613.6 557 57.6
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 1.2e-170 604.0 551 55.0
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 8.8e-166 587.8 392 72.4
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.5e-160 569.7 487 56.5
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 1.2e-154 550.8 323 81.7
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.8e-142 510.4 290 81.7
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 1.2e-141 507.7 309 81.9
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 2.2e-140 503.4 320 74.4
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 1.5e-136 490.7 323 72.4
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.3e-134 483.4 336 68.8
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 4.7e-127 459.1 270 83.3
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.0e-113 413.3 288 69.1
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 6.2e-111 405.6 274 72.3
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 1.4e-102 377.9 239 80.3
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 3.5e-98 363.2 247 74.1
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 1.9e-91 340.9 240 69.6
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.2e-90 338.2 266 65.0
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 2.1e-82 310.8 268 59.0
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 5.3e-54 216.5 142 76.1
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.0e-53 214.5 139 74.1
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 7.7e-53 212.6 139 73.4
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.2e-52 211.1 138 72.5
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.9e-52 210.7 137 73.0
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 6.7e-49 199.5 181 58.6
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.4e-46 191.8 128 72.7
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 1.6e-37 161.8 98 78.6
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 2.5e-35 154.5 98 75.5
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 2.2e-23 114.8 107 57.0
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 1.1e-22 112.5 63 81.0
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 1.8e-22 111.7 63 79.4
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 7.0e-22 109.8 63 77.8
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-21 109.0 71 69.0
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 8.6e-20 102.8 57 77.2
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.3e-19 100.9 63 74.6
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.6e-18 98.6 63 73.0
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 8.0e-18 96.3 431 24.6
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 1.2e-16 92.4 62 71.0
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.5e-16 92.0 488 23.6
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 1.7e-15 88.6 245 27.8
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-13 82.4 54 70.4
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 1.2e-13 82.4 523 24.1
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 1.6e-10 72.0 54 55.6
ECA247G1273 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.2e-07 61.6 61 45.9
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 4.1e-06 57.4 48 58.3
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.1e-06 57.4 48 58.3


User provided reference genes

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