Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.3e-29 132.9 91 100.0
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.2e-18 95.5 74 91.9
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 2.2e-18 95.5 74 90.5
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.9e-16 87.0 76 85.5
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.4e-15 86.3 75 85.3
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.3e-13 79.7 81 72.8
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 6.3e-13 77.4 72 79.2
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 6.3e-13 77.4 72 79.2
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 1.1e-12 76.6 72 77.8
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 4.1e-12 74.7 81 75.3
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 9.1e-12 73.6 81 72.8
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 9.1e-12 73.6 72 76.4
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 1.2e-11 73.2 81 74.1
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.5e-11 72.8 39 87.2
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.6e-11 72.0 81 66.7
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 7.7e-11 70.5 72 73.6
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.7e-11 70.5 75 69.3
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 1.0e-10 70.1 72 77.8
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 1.3e-10 69.7 72 72.2
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.7e-10 69.3 73 75.3
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.7e-10 69.3 72 76.4
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.7e-10 69.3 71 74.6
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.2e-10 68.9 74 75.7
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.9e-10 68.6 73 74.0
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 3.8e-10 68.2 75 73.3
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 3.8e-10 68.2 72 70.8
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 5.0e-10 67.8 74 71.6
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 6.5e-10 67.4 73 72.6
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 8.5e-10 67.0 73 72.6
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 8.5e-10 67.0 73 72.6
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 8.5e-10 67.0 72 72.2
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 8.5e-10 67.0 81 69.1
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.1e-09 66.6 71 71.8
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.4e-09 66.2 37 81.1
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.9e-09 65.9 71 73.2
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 2.5e-09 65.5 75 69.3
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 2.5e-09 65.5 87 63.2
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 2.5e-09 65.5 37 81.1
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.2e-09 65.1 72 72.2
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 3.2e-09 65.1 78 67.9
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 4.2e-09 64.7 72 69.4
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 7.2e-09 63.9 72 72.2
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 9.4e-09 63.5 73 71.2
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 9.4e-09 63.5 70 72.9
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 9.4e-09 63.5 72 69.4
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 1.2e-08 63.2 72 68.1
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 1.2e-08 63.2 73 71.2
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 1.2e-08 63.2 73 69.9
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.2e-08 63.2 72 73.6
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.1e-08 62.4 76 72.4
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.1e-08 62.4 71 70.4
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.7e-08 62.0 73 72.6
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.6e-08 61.6 73 72.6
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 4.7e-08 61.2 71 69.0
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 4.7e-08 61.2 72 69.4
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 4.7e-08 61.2 74 66.2
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 4.7e-08 61.2 72 63.9
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 4.7e-08 61.2 78 73.1
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 6.1e-08 60.8 37 81.1
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.1e-08 60.8 73 67.1
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 6.1e-08 60.8 78 62.8
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 7.9e-08 60.5 72 68.1
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.0e-07 60.1 73 68.5
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 1.0e-07 60.1 37 67.6
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.4e-07 59.7 75 64.0
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.4e-07 59.7 75 66.7
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 1.4e-07 59.7 72 72.2
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.8e-07 59.3 73 69.9
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 2.3e-07 58.9 72 65.3
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 3.9e-07 58.2 72 68.1
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 3.9e-07 58.2 73 64.4
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 3.9e-07 58.2 47 61.7
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 3.9e-07 58.2 47 61.7
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 3.9e-07 58.2 47 61.7
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 3.9e-07 58.2 73 68.5
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.9e-07 58.2 73 68.5
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 3.9e-07 58.2 41 65.9
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 5.1e-07 57.8 36 75.0
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 5.1e-07 57.8 40 75.0
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 5.1e-07 57.8 74 67.6
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 5.1e-07 57.8 40 72.5
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 5.1e-07 57.8 73 68.5
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 6.7e-07 57.4 72 65.3
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 8.8e-07 57.0 71 76.1
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 8.8e-07 57.0 73 68.5
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 8.8e-07 57.0 72 70.8
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.1e-06 56.6 37 73.0
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 1.1e-06 56.6 88 37.5
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.1e-06 56.6 73 67.1
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.1e-06 56.6 71 69.0
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.5e-06 56.2 72 63.9
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.5e-06 56.2 72 76.4
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.5e-06 56.2 73 64.4
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 2.0e-06 55.8 43 67.4
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 2.6e-06 55.5 72 66.7
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.4e-06 54.7 30 83.3
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.4e-06 54.7 73 67.1
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 5.7e-06 54.3 38 65.8
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 5.7e-06 54.3 73 67.1
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 7.4e-06 53.9 42 64.3
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 9.7e-06 53.5 85 60.0


User provided reference genes

Program Settings