Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 1.5e-289 998.8 496 100.0
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 3.6e-280 967.6 496 96.2
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 1.4e-279 965.7 496 96.0
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 7.3e-257 890.2 497 87.3
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.9e-252 875.5 497 86.5
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 4.9e-245 850.9 497 84.1
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 9.0e-239 830.1 502 83.3
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.3e-180 635.6 492 65.9
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 1.2e-179 633.6 479 65.6
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 5.7e-177 624.8 498 62.7
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 8.3e-176 620.9 481 65.7
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 5.9e-174 614.8 503 63.2
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 8.6e-173 610.9 489 63.6
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 2.8e-171 605.9 495 62.8
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 3.6e-171 605.5 488 62.5
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 1.0e-170 604.0 492 61.8
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 3.1e-170 602.4 486 60.9
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 3.1e-170 602.4 485 62.3
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 3.1e-170 602.4 492 62.2
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 5.2e-170 601.7 493 63.7
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 6.8e-170 601.3 490 62.7
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 6.8e-170 601.3 490 62.9
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 8.9e-170 600.9 455 66.2
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 5.8e-169 598.2 458 65.7
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 2.2e-168 596.3 492 61.2
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 2.9e-168 595.9 427 67.9
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 4.9e-168 595.1 497 63.8
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 8.3e-168 594.3 487 62.6
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.4e-167 593.6 490 62.4
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 1.9e-167 593.2 498 61.6
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 2.4e-167 592.8 495 60.2
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 3.2e-167 592.4 497 61.0
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 5.4e-167 591.7 490 63.7
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 9.2e-167 590.9 488 60.5
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 1.6e-166 590.1 490 62.4
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 6.0e-166 588.2 492 60.0
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 5.0e-165 585.1 458 64.4
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 6.6e-165 584.7 496 61.1
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 8.6e-165 584.3 497 60.0
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 1.5e-164 583.6 482 61.8
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 1.6e-163 580.1 463 65.2
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 1.1e-162 577.4 487 61.0
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 1.4e-162 577.0 487 60.8
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 1.8e-162 576.6 492 58.3
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 3.1e-162 575.9 551 56.3
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 4.0e-162 575.5 497 61.2
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 2.0e-161 573.2 494 58.7
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 2.0e-161 573.2 497 60.4
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 3.4e-161 572.4 479 59.3
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 4.9e-160 568.5 492 58.7
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 8.3e-160 567.8 497 60.0
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 1.4e-159 567.0 421 62.9
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 1.4e-159 567.0 495 58.8
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 2.4e-159 566.2 457 60.2
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 3.2e-159 565.8 496 58.3
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 3.2e-159 565.8 496 58.3
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 9.2e-159 564.3 497 59.6
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.2e-158 563.9 485 58.1
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 1.2e-158 563.9 429 62.7
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 2.7e-158 562.8 492 58.9
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 3.5e-158 562.4 502 58.6
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 4.6e-158 562.0 496 57.9
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 4.6e-158 562.0 475 59.4
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 6.0e-158 561.6 404 66.8
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.3e-157 560.5 493 59.0
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 1.3e-157 560.5 497 57.9
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 1.7e-157 560.1 492 58.9
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 2.3e-157 559.7 423 63.4
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 2.3e-157 559.7 438 62.8
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 5.1e-157 558.5 484 58.1
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 6.6e-157 558.1 497 59.8
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 8.6e-157 557.8 483 57.8
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 8.6e-157 557.8 488 57.6
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 1.5e-156 557.0 497 57.5
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 1.5e-156 557.0 483 59.4
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 1.6e-155 553.5 482 57.7
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.4e-154 550.4 497 59.0
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 5.2e-154 548.5 497 57.5
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 2.0e-153 546.6 490 55.9
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 9.9e-153 544.3 482 57.1
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.3e-152 543.9 496 56.5
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 4.9e-152 542.0 449 61.0
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 1.9e-151 540.0 454 58.8
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 5.4e-151 538.5 481 57.0
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 4.6e-150 535.4 401 66.8
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 4.6e-150 535.4 484 56.0
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 2.5e-148 529.6 462 58.7
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 7.3e-148 528.1 462 58.4
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.6e-147 526.9 493 56.0
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 1.4e-146 523.9 498 54.2
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 9.9e-145 517.7 495 55.6
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 1.1e-143 514.2 502 53.8
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 5.4e-143 511.9 513 51.1
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 3.0e-141 506.1 492 54.3
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 3.9e-141 505.8 493 54.2
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 1.5e-140 503.8 400 61.0
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 2.8e-139 499.6 408 60.0
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 4.8e-139 498.8 400 59.5
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.3e-136 490.7 378 64.8
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 2.2e-136 490.0 503 50.3
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 6.4e-136 488.4 452 55.3
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 1.4e-135 487.3 453 55.4
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 6.7e-133 478.4 345 67.2
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 2.2e-128 463.4 348 66.4
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.7e-126 456.4 340 65.9
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 4.6e-126 455.7 347 65.7
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 7.4e-124 448.4 346 63.3
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 2.0e-113 413.7 283 70.3
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 2.0e-92 344.0 499 41.3
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 5.9e-89 332.4 249 66.7
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 3.6e-86 323.2 470 40.4
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 5.5e-79 299.3 401 43.9
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 2.9e-72 276.9 250 58.4
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.1e-71 275.0 230 60.9
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 9.5e-71 271.9 417 39.6
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 1.0e-69 268.5 200 68.0
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 4.4e-68 263.1 202 63.9
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 4.9e-67 259.6 487 34.7
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 1.2e-54 218.4 179 60.3
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 3.1e-53 213.8 328 41.2
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.9e-51 207.2 166 62.0
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 4.1e-50 203.4 452 30.5
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 7.3e-39 166.0 243 39.1
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.2e-36 158.7 194 49.0
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 8.4e-35 152.5 274 38.7
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 2.4e-34 151.0 168 49.4
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.7e-32 144.8 110 63.6
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 8.7e-32 142.5 112 62.5
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 1.1e-31 142.1 333 31.2
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.2e-30 138.7 114 60.5
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 1.3e-22 112.1 75 70.7
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 3.6e-22 110.5 77 64.9
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 4.9e-19 100.1 111 45.9
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 2.5e-15 87.8 85 56.5
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 2.9e-11 74.3 56 62.5


User provided reference genes

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