Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.8e-134 482.6 249 100.0
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 9.4e-128 460.3 249 94.8
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.7e-127 458.0 249 93.6
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 7.0e-115 417.5 249 86.3
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.0e-114 416.0 249 86.3
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 4.5e-114 414.8 249 85.9
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.8e-110 402.9 219 92.7
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 4.4e-109 398.3 249 83.1
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 7.8e-106 387.5 228 88.6
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 5.0e-97 358.2 247 76.5
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 4.3e-96 355.1 246 77.6
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 3.6e-95 352.1 246 74.8
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.1e-94 350.5 217 84.8
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 2.3e-94 349.4 245 73.9
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.0e-94 348.6 246 73.6
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 4.0e-94 348.6 248 74.6
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 6.8e-94 347.8 250 76.0
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 6.8e-94 347.8 250 76.0
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 5.8e-93 344.7 249 73.1
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 7.5e-93 344.4 249 73.1
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.3e-92 343.6 249 73.9
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 3.7e-92 342.0 249 72.7
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 6.4e-92 341.3 257 72.4
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-91 340.5 249 73.1
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.9e-91 339.7 246 73.6
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.4e-91 339.3 249 72.7
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.4e-91 339.3 249 72.7
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.2e-91 339.0 206 85.0
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 5.4e-91 338.2 255 71.4
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 9.2e-91 337.4 245 72.2
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.2e-90 337.0 249 71.9
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 2.0e-90 336.3 248 72.6
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 7.8e-90 334.3 247 72.5
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.0e-89 334.0 255 69.8
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.3e-89 333.6 251 72.1
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 1.3e-89 333.6 246 72.8
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 2.3e-89 332.8 266 68.8
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.0e-89 332.4 246 70.7
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 3.0e-89 332.4 250 70.8
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 5.0e-89 331.6 249 69.9
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 8.6e-89 330.9 254 72.4
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 8.6e-89 330.9 249 71.5
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.9e-88 329.7 249 70.3
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 2.5e-88 329.3 247 71.7
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.3e-88 328.6 249 70.3
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 5.6e-88 328.2 250 70.4
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 7.3e-88 327.8 248 72.2
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.2e-87 327.0 249 71.1
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 2.1e-87 326.2 244 74.6
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.1e-87 326.2 252 71.4
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 2.8e-87 325.9 248 70.6
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.8e-87 325.9 247 70.9
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 4.7e-87 325.1 247 70.4
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 6.2e-87 324.7 246 71.1
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-86 323.9 249 69.5
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.8e-86 323.2 252 69.4
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 4.0e-86 322.0 249 69.9
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 5.2e-86 321.6 248 70.6
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 5.2e-86 321.6 248 70.2
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 6.8e-86 321.2 256 68.8
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 8.9e-86 320.9 220 75.5
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 8.9e-86 320.9 255 69.0
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 8.9e-86 320.9 235 72.8
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 8.9e-86 320.9 239 72.8
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.2e-85 320.5 252 70.2
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.2e-85 320.5 247 68.4
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 2.0e-85 319.7 251 69.7
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.6e-85 319.3 248 69.8
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.6e-85 319.3 247 68.4
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 4.4e-85 318.5 250 68.4
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 7.5e-85 317.8 252 68.7
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.3e-84 317.0 255 69.0
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 1.7e-84 316.6 235 71.5
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.7e-84 316.6 246 69.5
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.1e-83 313.9 249 67.9
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.1e-83 313.9 255 68.2
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.4e-83 313.5 248 68.5
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.4e-83 312.8 252 67.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.1e-83 312.0 248 68.5
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.4e-83 311.6 248 68.1
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.4e-83 311.6 248 68.1
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.4e-83 311.6 248 68.1
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 9.2e-83 310.8 248 68.1
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 9.2e-83 310.8 257 66.9
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.6e-82 310.1 247 68.4
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.7e-81 306.6 248 67.3
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 3.0e-81 305.8 259 65.3
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 3.9e-81 305.4 259 65.6
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 5.1e-81 305.1 244 69.3
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 6.6e-81 304.7 238 68.9
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 2.5e-80 302.8 250 67.2
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.5e-80 302.8 252 63.1
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.3e-80 302.0 257 64.2
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 9.5e-80 300.8 251 65.3
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.6e-79 300.1 247 65.2
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.1e-79 299.7 233 68.2
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.1e-79 299.7 232 69.0
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 4.7e-79 298.5 252 63.1
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-78 297.4 241 67.2
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.1e-78 297.4 247 63.2
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.4e-78 296.2 246 62.2
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 4.0e-78 295.4 256 62.5
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 6.8e-78 294.7 247 62.8
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.2e-77 293.9 248 62.5
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.2e-77 293.9 248 62.5
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.5e-77 293.5 248 63.7
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 2.6e-77 292.7 248 62.1
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 2.6e-77 292.7 249 62.2
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 4.4e-77 292.0 254 61.0
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 7.6e-77 291.2 246 63.8
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 9.9e-77 290.8 252 61.5
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 9.9e-77 290.8 248 62.1
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 9.9e-77 290.8 251 61.8
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.7e-76 290.0 249 65.1
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.9e-76 289.3 252 61.5
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 2.9e-76 289.3 256 62.1
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 8.4e-76 287.7 251 63.3
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.9e-75 286.6 252 61.9
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 2.4e-75 286.2 233 67.8
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.1e-75 285.4 252 60.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 9.2e-75 284.3 254 59.8
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 7.8e-74 281.2 250 59.6
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 1.3e-73 280.4 315 54.3
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.7e-73 280.0 263 62.7
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 5.1e-73 278.5 253 61.3
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 5.1e-73 278.5 253 61.3
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 5.1e-73 278.5 253 61.3
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 2.5e-72 276.2 253 61.3
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 5.6e-72 275.0 388 46.9
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 5.6e-72 275.0 323 52.3
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.8e-70 270.0 233 63.9
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.0e-65 254.2 262 55.3
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 6.2e-63 245.0 247 55.1
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 4.0e-62 242.3 243 59.3
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 2.2e-60 236.5 248 53.2
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 3.8e-60 235.7 252 52.8
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 4.9e-60 235.3 248 55.2
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.4e-60 235.0 152 76.3
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.4e-59 233.8 243 55.6
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.4e-59 233.0 136 83.8
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.6e-58 230.3 147 76.2
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.5e-56 223.0 238 56.3
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 7.4e-56 221.5 250 52.4
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.5e-53 212.2 216 55.1
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.8e-53 211.8 167 64.7
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.8e-52 209.1 167 63.5
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.5e-48 196.4 268 48.1
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.2e-43 179.5 291 41.9
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.9e-41 172.6 192 54.7
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 6.7e-41 171.8 113 72.6
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 4.3e-40 169.1 117 72.6
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 2.7e-34 149.8 278 40.3
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.1e-33 145.6 128 64.1
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 5.7e-32 142.1 130 64.6
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 3.1e-30 136.3 289 35.3
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 3.4e-29 132.9 69 94.2
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.9e-25 119.4 78 79.5
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 6.7e-25 118.6 95 61.1
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.8e-23 113.2 87 60.9
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 2.8e-23 113.2 103 64.1
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.4e-17 94.4 110 40.0
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.0e-17 93.2 102 53.9
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 3.0e-17 93.2 120 49.2
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 5.7e-16 89.0 90 47.8
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.7e-15 87.4 78 64.1
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 7.0e-14 82.0 78 60.3
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.6e-10 69.7 81 48.1
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.3e-09 67.0 97 47.4
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.5e-08 64.3 135 43.0
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 4.4e-08 62.8 167 29.9


User provided reference genes

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