Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 2.7e-225 785.0 398 100.0
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 4.7e-222 774.2 398 98.5
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 6.1e-222 773.9 398 98.7
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 6.2e-214 747.3 396 95.2
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 1.6e-206 722.6 397 90.9
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 4.9e-195 684.5 407 87.7
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 3.3e-191 671.8 398 86.4
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 2.4e-186 655.6 390 83.3
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 3.2e-186 655.2 398 81.7
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 3.2e-186 655.2 398 81.2
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 7.8e-185 650.6 399 80.5
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 3.6e-182 641.7 398 80.2
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 3.6e-182 641.7 398 80.2
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 1.8e-181 639.4 398 79.4
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.4e-181 639.0 398 80.2
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 2.4e-181 639.0 398 79.4
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 3.1e-181 638.6 398 79.9
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 6.4e-179 630.9 396 78.5
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 3.0e-176 622.1 387 80.4
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 6.7e-176 620.9 398 77.4
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 8.7e-176 620.5 399 77.9
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 2.0e-172 609.4 398 78.1
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 9.9e-172 607.1 398 75.9
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.3e-171 606.7 398 76.9
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 1.7e-171 606.3 408 75.7
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 2.9e-171 605.5 376 80.3
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.9e-171 605.5 398 76.9
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 1.9e-170 602.8 419 73.3
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 3.2e-170 602.1 399 76.2
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 3.2e-170 602.1 401 76.1
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 4.2e-170 601.7 402 75.4
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 9.3e-170 600.5 400 77.0
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 1.2e-169 600.1 389 76.3
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 4.6e-169 598.2 398 76.6
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 6.0e-169 597.8 398 76.1
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.0e-168 597.0 398 76.1
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 1.3e-168 596.7 400 74.8
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.3e-168 596.7 398 76.4
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 1.8e-168 596.3 399 75.7
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 2.3e-168 595.9 402 75.6
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.0e-168 595.5 398 76.4
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.0e-168 595.5 398 75.9
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 3.0e-168 595.5 398 76.1
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 5.1e-168 594.7 398 76.1
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 6.7e-168 594.3 406 74.1
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.7e-168 594.0 403 75.7
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.1e-167 593.6 398 75.1
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.9e-167 592.8 398 75.6
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.9e-167 592.8 398 75.6
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 2.5e-167 592.4 398 76.1
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 5.6e-167 591.3 399 75.4
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 1.3e-166 590.1 406 73.6
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.3e-166 590.1 398 75.6
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 1.3e-166 590.1 399 74.7
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 1.3e-166 590.1 399 73.2
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 6.2e-166 587.8 405 74.8
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 3.8e-163 578.6 405 74.1
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 1.9e-162 576.2 403 72.0
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 7.1e-162 574.3 390 73.8
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 3.0e-160 568.9 398 71.6
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 2.5e-159 565.8 396 72.7
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 5.7e-159 564.7 398 71.4
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 7.4e-159 564.3 392 71.7
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 7.4e-159 564.3 400 72.0
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 9.7e-159 563.9 402 70.9
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 9.7e-159 563.9 340 80.9
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 2.8e-158 562.4 366 76.0
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 4.8e-158 561.6 402 70.6
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 6.3e-158 561.2 401 71.1
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 1.4e-157 560.1 407 70.3
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 2.0e-156 556.2 394 69.8
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 2.6e-156 555.8 404 69.8
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 1.7e-155 553.1 406 70.0
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 1.7e-155 553.1 407 69.5
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 2.2e-155 552.7 404 71.0
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 2.9e-155 552.4 408 69.4
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 6.5e-155 551.2 408 69.1
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 1.4e-154 550.1 406 69.2
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 1.4e-154 550.1 408 69.4
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 1.4e-154 550.1 406 70.7
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 3.2e-154 548.9 509 59.5
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 4.2e-154 548.5 408 68.9
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 7.2e-154 547.7 401 70.6
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 9.4e-154 547.4 406 69.0
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 1.2e-153 547.0 362 73.8
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 1.6e-153 546.6 406 69.0
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 2.1e-153 546.2 411 68.1
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 4.6e-153 545.0 408 69.9
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 1.8e-152 543.1 401 70.1
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 3.9e-152 542.0 429 66.0
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 6.3e-150 534.6 398 68.1
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 2.4e-149 532.7 403 67.7
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 7.7e-148 527.7 369 73.2
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 5.5e-146 521.5 401 67.8
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 2.2e-142 509.6 405 66.7
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 3.5e-140 502.3 399 64.9
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 5.0e-139 498.4 306 78.1
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 2.5e-138 496.1 306 78.4
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 2.2e-134 483.0 361 65.7
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 3.5e-132 475.7 283 80.6
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 5.0e-131 471.9 433 59.4
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 1.1e-130 470.7 365 63.3
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 5.2e-128 461.8 372 64.0
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 7.8e-108 394.8 337 57.6
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 1.2e-81 307.8 245 67.3
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 2.4e-77 293.5 317 52.4
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 1.1e-74 284.6 267 57.3
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 5.8e-71 272.3 160 79.4
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 9.9e-71 271.6 199 64.8
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 7.9e-68 261.9 223 62.8
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 2.8e-65 253.4 226 61.1
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 6.9e-64 248.8 203 59.1
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 6.2e-57 225.7 234 54.7
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 3.1e-56 223.4 260 50.0
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 6.0e-52 209.1 173 68.2
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 3.7e-49 199.9 205 52.7
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 1.2e-44 184.9 110 80.0
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 6.1e-44 182.6 110 79.1
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 5.3e-40 169.5 128 65.6
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 6.9e-40 169.1 100 79.0
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 3.4e-39 166.8 110 70.9
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.1e-37 161.8 374 34.0
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.8e-35 154.5 350 30.9
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.9e-35 153.3 145 60.7
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 5.7e-34 149.4 286 31.8
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 2.0e-31 141.0 266 33.5
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.7e-30 137.9 166 48.2
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.2e-30 137.5 166 48.2
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 5.5e-21 106.3 255 30.2
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 1.8e-19 101.3 83 65.1
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 2.3e-19 100.9 78 64.1
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 8.8e-19 99.0 207 30.0
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 1.5e-18 98.2 50 92.0
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 2.6e-18 97.4 51 88.2
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 5.7e-18 96.3 62 72.6
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 2.8e-17 94.0 58 77.6
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.8e-16 91.3 99 51.5
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.3e-16 89.7 60 70.0
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.7e-15 87.4 49 79.6
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 3.5e-15 87.0 67 65.7
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 5.9e-15 86.3 80 60.0
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 5.9e-15 86.3 80 60.0
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 5.9e-15 86.3 194 31.4
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 8.5e-14 82.4 51 68.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.9e-13 81.3 53 71.7
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.9e-13 81.3 51 74.5
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 2.5e-13 80.9 50 76.0
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 5.5e-13 79.7 52 71.2
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 5.5e-13 79.7 52 71.2
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.0e-12 75.9 52 69.2
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.6e-10 70.9 48 68.8
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.6e-10 70.9 48 68.8
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 1.8e-08 64.7 49 63.3
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 2.7e-07 60.8 40 70.0
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 5.0e-06 56.6 75 45.3


User provided reference genes

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