Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004774 Solanum tuberosum HOM05D003225 ORTHO05D003818 1.2e-36 156.0 81 100.0
FAN24G0301 Fragaria x ananassa HOM05D003225 ORTHO05D003818 1.1e-21 106.3 78 70.5
Nitab4.5_0001590g0020 Nicotiana tabacum HOM05D003225 ORTHO05D003818 1.1e-21 106.3 66 83.3
FAN15G1218 Fragaria x ananassa HOM05D003225 ORTHO05D003818 1.5e-21 105.9 78 70.5
Nitab4.5_0007181g0010 Nicotiana tabacum HOM05D003225 ORTHO05D003818 4.3e-21 104.4 67 77.6
FvH4_2g20180 Fragaria vesca HOM05D003225 ORTHO05D003818 5.6e-21 104.0 75 70.7
Cc01_g17570 Coffea canephora HOM05D003225 ORTHO05D003818 7.3e-21 103.6 76 65.8
TAR365G0417 Trochodendron aralioides HOM05D003225 ORTHO05D003818 3.6e-20 101.3 75 66.7
Peaxi162Scf01083g00112 Petunia axillaris HOM05D003225 ORTHO05D003818 6.2e-20 100.5 65 78.5
Nitab4.5_0003050g0010 Nicotiana tabacum HOM05D003225 ORTHO05D003818 8.0e-20 100.1 79 67.1
RcHm_v2.0_Chr6g0285941 Rosa chinensis HOM05D003225 ORTHO05D003818 8.0e-20 100.1 75 66.7
Cpa.g.sc87.66 Carica papaya HOM05D003225 ORTHO05D003818 1.4e-19 99.4 75 66.7
MELO3C012819.2 Cucumis melo HOM05D003225 ORTHO05D003818 1.4e-19 99.4 74 67.6
PSO832G0562 Papaver somniferum HOM05D003225 ORTHO05D003818 1.4e-19 99.4 75 62.7
QL09p042915 Quercus lobata HOM05D003225 ORTHO05D003818 3.1e-19 98.2 75 66.7
Ah.08g213770 Amaranthus hybridus HOM05D003225 ORTHO05D003818 4.0e-19 97.8 76 63.2
Cc01_g17610 Coffea canephora HOM05D003225 ORTHO05D003818 4.0e-19 97.8 75 62.7
PSO063G6030 Papaver somniferum HOM05D003225 ORTHO05D003818 4.0e-19 97.8 75 62.7
PGSC0003DMG400009744 Solanum tuberosum HOM05D003225 ORTHO05D003818 4.0e-19 97.8 74 63.5
ClCG07G001550 Citrullus lanatus HOM05D003225 ORTHO05D003818 5.2e-19 97.4 74 67.6
Solyc09g064240.3 Solanum lycopersicum HOM05D003225 ORTHO05D003818 5.2e-19 97.4 74 63.5
Sopen09g025450 Solanum pennellii HOM05D003225 ORTHO05D003818 5.2e-19 97.4 74 63.5
Migut.N02238 Erythranthe guttata HOM05D003225 ORTHO05D003818 6.8e-19 97.1 74 62.2
Nn1g03053 Nelumbo nucifera HOM05D003225 ORTHO05D003818 6.8e-19 97.1 74 68.9
Lalb_Chr02g0152861 Lupinus albus HOM05D003225 ORTHO05D003818 8.9e-19 96.7 76 64.5
Actinidia30111 Actinidia chinensis HOM05D003225 ORTHO05D003818 1.2e-18 96.3 74 64.9
EL10Ac7g17735 Beta vulgaris HOM05D003225 ORTHO05D003818 1.2e-18 96.3 77 59.7
Migut.D00492 Erythranthe guttata HOM05D003225 ORTHO05D003818 1.5e-18 95.9 75 61.3
PSO764G0139 Papaver somniferum HOM05D003225 ORTHO05D003818 1.5e-18 95.9 75 61.3
CiPaw.04G191600 Carya illinoinensis HOM05D003225 ORTHO05D003818 2.0e-18 95.5 75 64.0
ClCG07G001530 Citrullus lanatus HOM05D003225 ORTHO05D003818 2.0e-18 95.5 78 61.5
CsaV3_3G028560 Cucumis sativus L. HOM05D003225 ORTHO05D003818 2.0e-18 95.5 74 64.9
MD10G1173500 Malus domestica HOM05D003225 ORTHO05D003818 2.0e-18 95.5 75 64.0
Cfa002504 Carpinus fangiana HOM05D003225 ORTHO05D003818 2.6e-18 95.1 75 61.3
Solyc08g078370.4 Solanum lycopersicum HOM05D003225 ORTHO05D003818 2.6e-18 95.1 78 64.1
Sopen08g026860 Solanum pennellii HOM05D003225 ORTHO05D003818 2.6e-18 95.1 78 64.1
CANSAT01G2940 Cannabis sativa HOM05D003225 ORTHO05D003818 3.4e-18 94.7 75 60.0
Sc02g0004250 Simmondsia chinensis HOM05D003225 ORTHO05D003818 3.4e-18 94.7 75 62.7
CANSAT01G1040 Cannabis sativa HOM05D003225 ORTHO05D003818 4.4e-18 94.4 75 60.0
Lalb_Chr06g0170821 Lupinus albus HOM05D003225 ORTHO05D003818 4.4e-18 94.4 75 64.0
Lalb_Chr06g0170851 Lupinus albus HOM05D003225 ORTHO05D003818 4.4e-18 94.4 75 64.0
Psat6g063880 Pisum sativum HOM05D003225 ORTHO05D003818 4.4e-18 94.4 75 62.7
Atru.chr5.1956 Acer truncatum HOM05D003225 ORTHO05D003818 5.8e-18 94.0 75 65.3
AUR62025409 Chenopodium quinoa HOM05D003225 ORTHO05D003818 5.8e-18 94.0 75 58.7
SEGI_31401 Sequoiadendron giganteum HOM05D003225 ORTHO05D003818 5.8e-18 94.0 75 61.3
Thecc.01G246600 Theobroma cacao HOM05D003225 ORTHO05D003818 5.8e-18 94.0 75 58.7
TPR.G26517 Trifolium pratense HOM05D003225 ORTHO05D003818 5.8e-18 94.0 75 62.7
Zm00001eb034820 Zea mays HOM05D003225 ORTHO05D003818 5.8e-18 94.0 75 61.3
Manes.12G039500 Manihot esculenta HOM05D003225 ORTHO05D003818 7.5e-18 93.6 73 64.4
Sed0003992 Sechium edule HOM05D003225 ORTHO05D003818 7.5e-18 93.6 74 63.5
ECA248G2748 Erigeron canadensis HOM05D003225 ORTHO05D003818 9.8e-18 93.2 75 62.7
Glyma.03G169300 Glycine max HOM05D003225 ORTHO05D003818 9.8e-18 93.2 75 61.3
Phvul.007G154800 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 9.8e-18 93.2 75 62.7
Potri.002G254500 Populus trichocarpa HOM05D003225 ORTHO05D003818 9.8e-18 93.2 75 64.0
ATR0088G044 Amborella trichopoda HOM05D003225 ORTHO05D003818 1.3e-17 92.8 75 62.7
Medtr1g069320 Medicago truncatula HOM05D003225 ORTHO05D003818 1.3e-17 92.8 75 61.3
COL.COLO4_24810 Corchorus olitorius HOM05D003225 ORTHO05D003818 2.2e-17 92.0 75 57.3
TWI12G1380 Tripterygium wilfordii HOM05D003225 ORTHO05D003818 2.2e-17 92.0 74 63.5
CiPaw.04G191700 Carya illinoinensis HOM05D003225 ORTHO05D003818 2.9e-17 91.7 75 61.3
Ca_09633_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 2.9e-17 91.7 75 61.3
Gohir.A08G046100 Gossypium hirsutum HOM05D003225 ORTHO05D003818 2.9e-17 91.7 75 56.0
Gohir.D08G056600 Gossypium hirsutum HOM05D003225 ORTHO05D003818 2.9e-17 91.7 75 56.0
Gorai.004G057700 Gossypium raimondii HOM05D003225 ORTHO05D003818 2.9e-17 91.7 75 56.0
Os08g0566400 Oryza sativa ssp. japonica HOM05D003225 ORTHO05D003818 2.9e-17 91.7 75 58.7
GSVIVG01028465001 Vitis vinifera HOM05D003225 ORTHO05D003818 3.7e-17 91.3 74 59.5
Prupe.8G212100 Prunus persica HOM05D003225 ORTHO05D003818 4.9e-17 90.9 75 57.3
Glyma.10G041500 Glycine max HOM05D003225 ORTHO05D003818 6.4e-17 90.5 73 63.0
Thhalv10025355m.g Eutrema salsugineum HOM05D003225 ORTHO05D003818 8.3e-17 90.1 75 58.7
Medtr7g099270 Medicago truncatula HOM05D003225 ORTHO05D003818 8.3e-17 90.1 75 58.7
VMungo0720G1232 Vigna mungo HOM05D003225 ORTHO05D003818 8.3e-17 90.1 75 60.0
Aqoxy5G00087 Aquilegia oxysepala HOM05D003225 ORTHO05D003818 1.1e-16 89.7 74 58.1
arahy.Tifrunner.gnm1.ann1.E3U1P5 Arachis hypogaea HOM05D003225 ORTHO05D003818 1.1e-16 89.7 75 58.7
Duzib138G1039 Durio zibethinus HOM05D003225 ORTHO05D003818 1.1e-16 89.7 75 57.3
HanXRQChr01g0014831 Helianthus annuus HOM05D003225 ORTHO05D003818 1.1e-16 89.7 75 60.0
MD05G1185300 Malus domestica HOM05D003225 ORTHO05D003818 1.1e-16 89.7 75 62.7
CiPaw.03G272800 Carya illinoinensis HOM05D003225 ORTHO05D003818 1.4e-16 89.4 75 58.7
Lj5g0003408 Lotus japonicus HOM05D003225 ORTHO05D003818 1.4e-16 89.4 75 58.7
arahy.Tifrunner.gnm1.ann1.C1DUQD Arachis hypogaea HOM05D003225 ORTHO05D003818 1.9e-16 89.0 75 58.7
Sp7g26690 Schrenkiella parvula HOM05D003225 ORTHO05D003818 1.9e-16 89.0 75 58.7
Hund18330 Selenicereus undatus HOM05D003225 ORTHO05D003818 1.9e-16 89.0 67 65.7
Aa31LG5G3370 Aethionema arabicum HOM05D003225 ORTHO05D003818 2.4e-16 88.6 74 56.8
BcaNung04702 Brassica carinata HOM05D000200 ORTHO05D003818 2.4e-16 88.6 75 57.3
CDE05G2850 Ceratophyllum demersum HOM05D003225 ORTHO05D003818 2.4e-16 88.6 74 56.8
Ciclev10020430m.g Citrus clementina HOM05D003225 ORTHO05D003818 2.4e-16 88.6 74 56.8
Phvul.001G167800 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 2.4e-16 88.6 71 60.6
TPR.G30862 Trifolium pratense HOM05D003225 ORTHO05D003818 2.4e-16 88.6 75 61.3
Gohir.A07G203100 Gossypium hirsutum HOM05D003225 ORTHO05D003818 4.1e-16 87.8 75 54.7
Gohir.D07G209300 Gossypium hirsutum HOM05D003225 ORTHO05D003818 4.1e-16 87.8 75 54.7
Gorai.001G236300 Gossypium raimondii HOM05D003225 ORTHO05D003818 4.1e-16 87.8 75 54.7
Glyma.03G169400 Glycine max HOM05D003225 ORTHO05D003818 5.4e-16 87.4 75 58.7
arahy.Tifrunner.gnm1.ann1.5QC4GP Arachis hypogaea HOM05D003225 ORTHO05D003818 7.0e-16 87.0 76 56.6
A01p09230 Brassica napus HOM05D000200 ORTHO05D000262 7.0e-16 87.0 75 56.0
Lj1g0002088 Lotus japonicus HOM05D003225 ORTHO05D003818 7.0e-16 87.0 70 60.0
Rhsim01G0259300 Rhododendron simsii HOM05D003225 ORTHO05D003818 7.0e-16 87.0 88 58.0
BcaNung01374 Brassica carinata HOM05D000200 ORTHO05D000262 9.2e-16 86.7 75 56.0
Medtr7g099280 Medicago truncatula HOM05D003225 ORTHO05D003818 1.2e-15 86.3 75 58.7
AL7G23810 Arabidopsis lyrata HOM05D003225 ORTHO05D003818 1.6e-15 85.9 74 55.4
PGR044G1760 Punica granatum HOM05D003225 ORTHO05D003818 2.0e-15 85.5 75 58.7
VMungo1383G3625 Vigna mungo HOM05D003225 ORTHO05D003818 2.0e-15 85.5 75 57.3
Lalb_Chr02g0152831 Lupinus albus HOM05D003225 ORTHO05D003818 2.7e-15 85.1 75 56.0
Lalb_Chr25g0289811 Lupinus albus HOM05D003225 ORTHO05D003818 2.7e-15 85.1 75 60.0
AT5G43910 Arabidopsis thaliana HOM05D003225 ORTHO05D003818 3.5e-15 84.7 74 54.1
VMungo1383G0903 Vigna mungo HOM05D003225 ORTHO05D003818 3.5e-15 84.7 71 57.7
Carub.0007s1194 Capsella rubella HOM05D003225 ORTHO05D003818 4.6e-15 84.3 74 55.4
Psat3g051960 Pisum sativum HOM05D003225 ORTHO05D003818 4.6e-15 84.3 75 57.3
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 6.0e-15 84.0 70 55.7
ECA247G2482 Erigeron canadensis HOM05D003225 ORTHO05D003818 7.8e-15 83.6 74 55.4
Glyma.10G041400 Glycine max HOM05D003225 ORTHO05D003818 7.8e-15 83.6 75 56.0
Phvul.007G154700 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 7.8e-15 83.6 75 56.0
Hund05507 Selenicereus undatus HOM05D003225 ORTHO05D003818 7.8e-15 83.6 71 59.2
Glyma.13G128300 Glycine max HOM05D003225 ORTHO05D003818 1.0e-14 83.2 75 57.3
Thhalv10003370m.g Eutrema salsugineum HOM05D003225 ORTHO05D003818 1.3e-14 82.8 74 54.1
AL8G16220 Arabidopsis lyrata HOM05D003225 ORTHO05D003818 1.7e-14 82.4 74 54.1
Lj5g0007325 Lotus japonicus HOM05D003225 ORTHO05D003818 2.3e-14 82.0 75 53.3
Mapoly0004s0194 Marchantia polymorpha HOM05D003225 ORTHO05D003818 3.0e-14 81.6 71 57.7
Carub.0008s0468 Capsella rubella HOM05D003225 ORTHO05D003818 3.9e-14 81.3 74 54.1
HanXRQChr10g0280301 Helianthus annuus HOM05D003225 ORTHO05D003818 3.9e-14 81.3 74 52.7
Psat6g063920 Pisum sativum HOM05D003225 ORTHO05D003818 3.9e-14 81.3 75 56.0
Hund05508 Selenicereus undatus HOM05D003225 ORTHO05D003818 3.9e-14 81.3 75 52.0
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 6.6e-14 80.5 68 61.8
Nitab4.5_0000385g0120 Nicotiana tabacum HOM05D003225 ORTHO05D003818 6.6e-14 80.5 65 64.6
Peaxi162Scf00214g00026 Petunia axillaris HOM05D003225 ORTHO05D003818 6.6e-14 80.5 70 64.3
AUR62008831 Chenopodium quinoa HOM05D003225 ORTHO05D003818 8.6e-14 80.1 75 53.3
Nitab4.5_0000392g0040 Nicotiana tabacum HOM05D003225 ORTHO05D003818 1.1e-13 79.7 65 64.6
Peaxi162Scf00043g01711 Petunia axillaris HOM05D003225 ORTHO05D003818 1.1e-13 79.7 65 60.0
VMungo0720G1759 Vigna mungo HOM05D003225 ORTHO05D003818 1.1e-13 79.7 75 54.7
PGR083G1209 Punica granatum HOM05D003225 ORTHO05D003818 1.5e-13 79.3 72 55.6
Sc17g0002250 Simmondsia chinensis HOM05D003225 ORTHO05D003818 1.9e-13 79.0 75 54.7
AT4G28706 Arabidopsis thaliana HOM05D003225 ORTHO05D003818 2.5e-13 78.6 74 51.4
arahy.Tifrunner.gnm1.ann1.D8W1EX Arachis hypogaea HOM05D003225 ORTHO05D003818 3.3e-13 78.2 75 49.3
Medtr1g069325 Medicago truncatula HOM05D003225 ORTHO05D003818 3.3e-13 78.2 74 54.1
arahy.Tifrunner.gnm1.ann1.UB37AI Arachis hypogaea HOM05D003225 ORTHO05D003818 4.3e-13 77.8 74 48.6
arahy.Tifrunner.gnm1.ann1.ZCX39R Arachis hypogaea HOM05D003225 ORTHO05D003818 4.3e-13 77.8 75 53.3
PGR083G2794 Punica granatum HOM05D003225 ORTHO05D003818 5.6e-13 77.4 72 54.2
BcaC06g34611 Brassica carinata HOM05D000200 ORTHO05D000262 7.3e-13 77.0 74 50.0
C07p26480 Brassica napus HOM05D003225 ORTHO05D003818 7.3e-13 77.0 74 50.0
BolC7t43177H Brassica oleracea HOM05D003225 ORTHO05D003818 7.3e-13 77.0 74 50.0
DCAR_004696 Daucus carota HOM05D003225 ORTHO05D003818 9.5e-13 76.6 66 56.1
Glyma.19G170600 Glycine max HOM05D003225 ORTHO05D003818 9.5e-13 76.6 74 54.1
Aa31LG2G21670 Aethionema arabicum HOM05D003225 ORTHO05D003818 1.2e-12 76.3 66 56.1
BraA06t27630Z Brassica rapa HOM05D003225 ORTHO05D003818 1.2e-12 76.3 75 49.3
Pp3c16_16280 Physcomitrium patens HOM05D003225 ORTHO05D003818 1.2e-12 76.3 75 46.7
Eucgr.K03579 Eucalyptus grandis HOM05D003225 ORTHO05D003818 1.6e-12 75.9 75 50.7
SGA_v2.0_scaffold32G13038 Striga asiatica HOM05D003225 ORTHO05D003818 2.1e-12 75.5 66 56.1
THA.LOC104826056 Tarenaya hassleriana HOM05D003225 ORTHO05D003818 2.1e-12 75.5 74 51.4
Lsat_1_v5_gn_5_180041 Lactuca sativa HOM05D003225 ORTHO05D003818 2.8e-12 75.1 66 53.0
PGR083G1413 Punica granatum HOM05D003225 ORTHO05D003818 2.8e-12 75.1 72 54.2
unitig_26.g9791 Utricularia gibba HOM05D003225 ORTHO05D003818 2.8e-12 75.1 106 42.5
A06p47620 Brassica napus HOM05D003225 ORTHO05D003818 3.6e-12 74.7 74 48.6
PGR083G1329 Punica granatum HOM05D003225 ORTHO05D003818 3.6e-12 74.7 72 52.8
BcaC06g31670 Brassica carinata HOM05D003225 ORTHO05D003818 4.7e-12 74.3 74 45.9
Nitab4.5_0001381g0020 Nicotiana tabacum HOM05D003225 ORTHO05D003818 4.7e-12 74.3 66 62.1
CBR_g19222 Chara braunii HOM05D003225 ORTHO05D003818 2.3e-11 72.0 74 48.6
BolC1t01042H Brassica oleracea HOM05D000200 ORTHO05D000262 4.0e-11 71.2 66 54.5
BraA01t00866Z Brassica rapa HOM05D000200 ORTHO05D000262 4.0e-11 71.2 66 54.5
CARHR179510 Cardamine hirsuta HOM05D003225 ORTHO05D003818 5.2e-11 70.9 79 43.0
Lsat_1_v5_gn_9_11840 Lactuca sativa HOM05D003225 ORTHO05D003818 5.2e-11 70.9 66 57.6
C01p10810 Brassica napus HOM05D000200 ORTHO05D000262 6.8e-11 70.5 66 53.0
arahy.Tifrunner.gnm1.ann1.P4ZHWF Arachis hypogaea HOM05D003225 ORTHO05D003818 1.5e-10 69.3 65 56.9
Ah.15g091560 Amaranthus hybridus HOM05D003225 ORTHO05D003818 3.4e-10 68.2 75 48.0
Eucgr.H00844 Eucalyptus grandis HOM05D003225 ORTHO05D003818 3.4e-10 68.2 71 49.3
Eucgr.H00838 Eucalyptus grandis HOM05D003225 ORTHO05D003818 7.5e-10 67.0 66 50.0
Cre01.g045640 Chlamydomonas reinhardtii HOM05D003225 ORTHO05D003818 2.2e-09 65.5 70 45.7
Eucgr.H00836 Eucalyptus grandis HOM05D003225 ORTHO05D003818 2.2e-09 65.5 71 46.5
THA.LOC104804033 Tarenaya hassleriana HOM05D003225 ORTHO05D003818 2.3e-06 55.5 75 46.7
MCO09G811 Micromonas commoda HOM05D003225 ORTHO05D003818 3.9e-06 54.7 66 40.9


User provided reference genes

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