Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.6e-261 905.6 467 100.0
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 5.8e-256 887.1 467 97.4
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 4.3e-251 870.9 469 95.9
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 3.4e-240 834.7 473 92.0
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 3.9e-228 794.7 522 81.2
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 3.2e-222 775.0 474 85.9
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 2.2e-218 762.3 509 80.4
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 4.1e-185 651.7 468 72.6
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 8.6e-183 644.0 468 72.2
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 6.8e-180 634.4 469 71.0
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 2.4e-177 625.9 473 70.6
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 5.4e-177 624.8 468 69.4
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 5.4e-177 624.8 467 69.6
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 2.7e-176 622.5 467 70.0
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 7.8e-176 620.9 469 68.7
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 2.3e-175 619.4 430 74.9
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 3.3e-174 615.5 467 70.4
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 2.4e-172 609.4 468 68.2
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 7.6e-171 604.4 467 67.0
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 2.2e-170 602.8 469 67.2
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.2e-169 599.0 468 67.7
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 5.4e-169 598.2 498 64.7
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 5.4e-169 598.2 468 67.3
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 2.1e-168 596.3 468 67.3
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 4.6e-168 595.1 468 67.1
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 4.6e-168 595.1 467 67.9
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 2.3e-167 592.8 468 68.2
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.3e-167 592.8 468 67.1
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 2.3e-167 592.8 471 68.2
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 1.5e-166 590.1 468 67.3
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 7.3e-166 587.8 467 67.2
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.6e-165 586.6 468 66.7
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 2.1e-165 586.3 469 66.7
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 2.8e-165 585.9 468 68.2
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 8.1e-165 584.3 490 64.1
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 2.4e-164 582.8 468 66.7
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.3e-164 581.6 468 66.5
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 1.2e-163 580.5 470 65.5
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 2.6e-163 579.3 467 65.5
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 1.9e-161 573.2 468 65.6
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 6.0e-160 568.2 470 65.1
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 2.3e-159 566.2 490 63.1
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 3.0e-159 565.8 479 63.7
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 3.9e-159 565.5 442 68.3
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 3.9e-159 565.5 470 66.0
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 6.6e-159 564.7 469 65.0
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.5e-158 563.5 532 60.3
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.5e-158 563.5 468 64.3
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.5e-158 563.5 492 63.6
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 5.6e-158 561.6 470 64.7
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 1.6e-157 560.1 468 63.7
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 2.1e-157 559.7 482 63.7
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.1e-156 557.4 468 65.2
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 2.4e-156 556.2 494 61.7
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 1.2e-155 553.9 470 63.6
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 7.6e-155 551.2 481 63.4
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.3e-154 550.4 470 66.4
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.4e-153 547.0 469 64.8
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 2.4e-153 546.2 469 64.4
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 3.5e-152 542.3 470 62.1
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 2.8e-149 532.7 490 60.4
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.0e-146 524.2 471 61.1
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 1.1e-145 520.8 478 61.5
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 1.2e-144 517.3 468 60.0
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.5e-142 510.4 510 58.0
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 1.5e-142 510.4 501 56.5
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 6.2e-141 505.0 480 61.7
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 3.1e-140 502.7 469 59.3
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 4.1e-140 502.3 506 56.1
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 3.0e-135 486.1 433 61.7
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 3.9e-135 485.7 477 56.0
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 8.7e-135 484.6 503 54.1
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 6.3e-133 478.4 499 56.3
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 1.8e-132 476.9 519 54.1
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 3.4e-131 472.6 478 60.7
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 3.4e-131 472.6 477 57.2
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 4.5e-131 472.2 493 56.0
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 8.5e-130 468.0 480 56.9
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 4.2e-129 465.7 480 56.9
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 4.2e-129 465.7 474 56.5
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 7.2e-129 464.9 545 52.1
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 6.1e-128 461.8 477 56.4
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 1.8e-127 460.3 480 56.5
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.8e-127 460.3 545 52.1
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 5.1e-127 458.8 488 56.8
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 6.7e-127 458.4 467 56.1
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 2.0e-126 456.8 466 56.7
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.1e-124 451.1 420 60.2
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 4.5e-123 445.7 558 49.8
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.2e-122 443.4 483 52.6
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 3.8e-122 442.6 352 67.6
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 1.2e-120 437.6 484 55.6
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 1.8e-119 433.7 496 54.6
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 1.5e-118 430.6 352 65.3
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 2.0e-118 430.3 490 54.3
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 2.0e-118 430.3 394 61.9
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 2.4e-116 423.3 538 50.0
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 5.9e-115 418.7 490 52.9
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 6.5e-114 415.2 517 51.8
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 6.5e-114 415.2 436 54.1
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 1.1e-113 414.5 488 54.1
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 7.2e-113 411.8 521 48.9
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.1e-112 410.2 517 48.9
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 3.0e-111 406.4 558 46.6
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.2e-102 377.9 308 66.9
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 6.3e-101 372.1 318 61.9
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 5.7e-94 349.0 259 73.4
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 4.1e-76 289.7 355 46.8
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 8.3e-69 265.4 216 64.4
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 3.2e-68 263.5 223 65.9
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 4.1e-68 263.1 223 65.9
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 3.0e-66 256.9 255 58.8
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 4.3e-65 253.1 220 65.5
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.1e-64 250.8 175 73.1
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 2.1e-64 250.8 270 55.6
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 1.1e-57 228.4 488 36.1
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 9.3e-52 208.8 367 39.5
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.3e-48 198.4 467 33.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 6.9e-47 192.6 532 33.3
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.9e-44 184.5 431 36.4
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 4.2e-44 183.3 521 33.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.0e-38 164.5 500 31.0
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 9.3e-36 155.6 137 59.9
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 6.0e-35 152.9 154 53.9
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 1.3e-34 151.8 181 49.7
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 3.0e-34 150.6 425 30.1
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 7.4e-33 146.0 128 60.9
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 7.6e-30 136.0 502 28.3
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.6e-27 128.3 459 27.9
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 6.9e-23 112.8 116 51.7
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 6.7e-18 96.3 83 67.5
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 7.9e-11 72.8 41 80.5
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.0e-06 58.2 118 33.1
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 3.4e-06 57.4 52 57.7
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 3.4e-06 57.4 52 57.7


User provided reference genes

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