Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 8.7e-66 253.4 124 100.0
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 7.4e-57 223.8 107 99.1
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 7.4e-57 223.8 107 99.1
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 5.8e-54 214.2 107 94.4
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 3.8e-53 211.5 107 93.5
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.4e-52 209.5 136 78.7
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 7.2e-52 207.2 107 90.7
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.2e-51 206.5 107 93.5
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.5e-51 204.9 107 92.5
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 4.6e-51 204.5 107 90.7
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.6e-51 204.5 107 90.7
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 7.9e-51 203.8 107 88.8
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.3e-50 203.0 107 89.7
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.3e-50 203.0 107 91.6
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.3e-50 203.0 107 88.8
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.8e-50 202.6 107 89.7
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 2.3e-50 202.2 107 89.7
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.3e-50 202.2 107 89.7
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 3.0e-50 201.8 114 82.5
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 8.7e-50 200.3 107 86.0
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.1e-49 199.9 115 82.6
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 1.5e-49 199.5 110 86.4
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 1.9e-49 199.1 107 86.0
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 2.5e-49 198.7 107 86.9
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 2.5e-49 198.7 107 86.9
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.5e-49 198.7 107 86.0
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 3.3e-49 198.4 110 85.5
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 3.3e-49 198.4 107 86.0
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 4.3e-49 198.0 107 86.9
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 4.3e-49 198.0 107 86.9
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 4.3e-49 198.0 107 86.0
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 5.7e-49 197.6 107 85.0
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 7.4e-49 197.2 108 87.0
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 7.4e-49 197.2 107 86.0
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 7.4e-49 197.2 107 86.9
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 7.4e-49 197.2 107 86.9
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 9.7e-49 196.8 109 85.3
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 9.7e-49 196.8 107 86.9
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 9.7e-49 196.8 107 86.0
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 9.7e-49 196.8 107 86.9
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 9.7e-49 196.8 107 85.0
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 1.3e-48 196.4 107 86.9
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 1.3e-48 196.4 107 86.9
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 1.3e-48 196.4 107 86.9
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 1.3e-48 196.4 107 86.0
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.6e-48 196.1 107 86.9
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 2.2e-48 195.7 107 87.9
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.2e-48 195.7 107 86.0
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 2.8e-48 195.3 110 81.8
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 2.8e-48 195.3 107 85.0
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 3.7e-48 194.9 107 85.0
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 3.7e-48 194.9 107 86.9
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 4.8e-48 194.5 107 84.1
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 4.8e-48 194.5 107 84.1
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 6.3e-48 194.1 107 85.0
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 8.2e-48 193.7 107 86.0
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 8.2e-48 193.7 107 86.0
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 8.2e-48 193.7 107 86.0
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 8.2e-48 193.7 109 83.5
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 8.2e-48 193.7 107 86.9
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 8.2e-48 193.7 107 84.1
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 1.1e-47 193.4 107 84.1
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 1.1e-47 193.4 107 85.0
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.1e-47 193.4 108 86.1
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.4e-47 193.0 108 85.2
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 1.8e-47 192.6 107 87.9
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.8e-47 192.6 107 84.1
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.8e-47 192.6 107 84.1
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 1.8e-47 192.6 107 84.1
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.8e-47 192.6 108 82.4
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.4e-47 192.2 107 83.2
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.4e-47 192.2 107 84.1
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 3.1e-47 191.8 107 86.0
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 3.1e-47 191.8 107 86.0
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 3.1e-47 191.8 107 86.0
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 3.1e-47 191.8 107 86.0
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 3.1e-47 191.8 107 85.0
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 3.1e-47 191.8 107 85.0
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.1e-47 191.8 107 85.0
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.1e-47 191.8 107 85.0
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 3.1e-47 191.8 107 84.1
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 5.3e-47 191.0 107 86.9
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 5.3e-47 191.0 107 84.1
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 6.9e-47 190.7 107 81.3
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 6.9e-47 190.7 107 81.3
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 9.0e-47 190.3 107 83.2
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 9.0e-47 190.3 107 86.0
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 9.0e-47 190.3 107 81.3
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.2e-46 189.9 107 83.2
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.2e-46 189.9 108 86.1
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 1.2e-46 189.9 107 85.0
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 2.0e-46 189.1 107 85.0
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 2.0e-46 189.1 107 83.2
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.6e-46 188.7 107 86.0
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 2.6e-46 188.7 107 86.0
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.6e-46 188.7 107 86.0
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 2.6e-46 188.7 107 86.0
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 2.6e-46 188.7 107 86.0
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 3.4e-46 188.3 107 85.0
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 3.4e-46 188.3 109 85.3
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 3.4e-46 188.3 107 79.4
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 4.5e-46 188.0 107 85.0
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 4.5e-46 188.0 107 85.0
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 4.5e-46 188.0 107 85.0
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 4.5e-46 188.0 116 81.9
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 7.7e-46 187.2 107 81.3
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 1.7e-45 186.0 107 85.0
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 2.2e-45 185.7 107 83.2
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 3.8e-45 184.9 109 83.5
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 6.5e-45 184.1 104 82.7
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.4e-44 183.0 107 80.4
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 2.5e-44 182.2 119 75.6
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 3.2e-44 181.8 107 80.4
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 7.2e-44 180.6 107 78.5
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 1.2e-43 179.9 108 83.3
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 3.0e-42 175.3 107 79.4
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 3.9e-42 174.9 107 79.4
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 8.8e-42 173.7 107 78.5
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.5e-41 172.9 95 84.2
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.7e-40 169.5 107 73.8
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.2e-40 169.1 107 75.7
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 3.1e-39 165.2 107 70.1
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 1.5e-38 162.9 107 72.0
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.0e-38 162.5 126 65.9
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.6e-38 162.2 142 59.2
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 3.8e-37 158.3 105 71.4
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.9e-36 156.0 75 92.0
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 4.2e-36 154.8 107 67.3
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.1e-35 152.5 75 90.7
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 1.4e-34 149.8 75 88.0
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 3.9e-34 148.3 75 88.0
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 2.2e-32 142.5 75 89.3
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 3.5e-30 135.2 79 81.0
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 7.7e-30 134.0 75 80.0
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.0e-29 133.7 75 85.3
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 8.5e-29 130.6 104 62.5
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 9.4e-28 127.1 91 69.2
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 2.3e-26 122.5 85 64.7
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.0e-26 122.1 91 65.9
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 3.3e-25 118.6 93 67.7
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 4.8e-24 114.8 93 63.4
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 6.3e-24 114.4 75 73.3
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 3.1e-23 112.1 107 57.0
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 9.1e-23 110.5 88 55.7
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 4.5e-22 108.2 75 68.0
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 7.7e-22 107.5 97 58.8
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 6.1e-19 97.8 85 52.9
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 2.3e-18 95.9 48 87.5
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 3.0e-18 95.5 48 89.6
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 1.2e-17 93.6 102 56.9
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 2.0e-17 92.8 102 54.9
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.2e-14 83.6 43 88.4
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 1.6e-14 83.2 78 51.3
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 1.2e-09 67.0 88 44.3
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 3.4e-09 65.5 45 71.1
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 4.4e-09 65.1 42 78.6


User provided reference genes

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