Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004743 Solanum tuberosum HOM05D007929 ORTHO05D008690 0.0e+00 1328.5 663 100.0
Sopen08g027490 Solanum pennellii HOM05D007929 ORTHO05D008690 0.0e+00 1145.2 666 87.7
Solyc08g079030.4 Solanum lycopersicum HOM05D007929 ORTHO05D008690 0.0e+00 1138.3 667 88.0
CAN.G1217.13 Capsicum annuum HOM05D007929 ORTHO05D008690 7.2e-276 953.7 702 72.5
Nitab4.5_0000993g0050 Nicotiana tabacum HOM05D007929 ORTHO05D008690 6.0e-222 774.6 708 62.3
Peaxi162Scf00002g00920 Petunia axillaris HOM05D007929 ORTHO05D008690 1.1e-215 753.8 698 62.0
Nitab4.5_0009716g0010 Nicotiana tabacum HOM05D007929 ORTHO05D008690 7.1e-207 724.5 709 58.5
Dinv21608 Davidia involucrata HOM05D007929 ORTHO05D008690 3.0e-80 303.9 729 35.5
Dinv39112 Davidia involucrata HOM05D007929 ORTHO05D008690 3.2e-74 283.9 722 35.2
Gorai.004G199400 Gossypium raimondii HOM05D007929 ORTHO05D008690 1.2e-57 228.8 730 31.8
Manes.01G077200 Manihot esculenta HOM05D007929 ORTHO05D008690 1.6e-57 228.4 708 31.6
Thecc.03G256000 Theobroma cacao HOM05D007929 ORTHO05D008690 6.1e-57 226.5 733 32.1
Gohir.A08G171000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 8.0e-57 226.1 730 32.1
Gohir.D08G189300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 1.0e-56 225.7 730 31.8
QL12p013187 Quercus lobata HOM05D007929 ORTHO05D008690 3.0e-56 224.2 734 30.8
Sabra01G0093400 Salix brachista HOM05D007929 ORTHO05D008690 1.4e-53 215.3 724 30.4
Potri.003G112000 Populus trichocarpa HOM05D007929 ORTHO05D008690 3.1e-53 214.2 719 31.0
Duzib084G1023 Durio zibethinus HOM05D007929 ORTHO05D008690 9.1e-53 212.6 739 31.3
Duzib205G1039 Durio zibethinus HOM05D007929 ORTHO05D008690 7.7e-52 209.5 738 32.5
Potri.001G121200 Populus trichocarpa HOM05D007929 ORTHO05D008690 1.7e-51 208.4 724 28.9
Duzib068G0525 Durio zibethinus HOM05D007929 ORTHO05D008690 1.1e-50 205.7 739 31.4
Ciclev10019204m.g Citrus clementina HOM05D007929 ORTHO05D008690 9.4e-50 202.6 710 30.7
Actinidia27458 Actinidia chinensis HOM05D007929 ORTHO05D008690 4.7e-49 200.3 718 29.2
MD04G1085400 Malus domestica HOM05D007929 ORTHO05D008690 8.0e-49 199.5 664 30.0
COL.COLO4_37202 Corchorus olitorius HOM05D007929 ORTHO05D008690 2.3e-48 198.0 714 32.1
Prupe.5G074300 Prunus persica HOM05D007929 ORTHO05D008690 8.8e-48 196.1 719 29.5
Sabra03G0077700 Salix brachista HOM05D007929 ORTHO05D008690 8.8e-48 196.1 719 30.6
Rhsim07G0105500 Rhododendron simsii HOM05D007929 ORTHO05D008690 2.0e-47 194.9 738 28.9
Oeu029333.1 Olea europaea HOM05D007929 ORTHO05D008690 2.8e-46 191.0 690 29.3
Gorai.008G237100 Gossypium raimondii HOM05D007929 ORTHO05D008690 1.4e-45 188.7 731 30.2
Actinidia05192 Actinidia chinensis HOM05D007929 ORTHO05D008690 3.1e-45 187.6 722 29.1
Gohir.A12G219000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 2.2e-43 181.4 741 29.0
TWI60G0818 Tripterygium wilfordii HOM05D007929 ORTHO05D008690 1.6e-41 175.3 709 27.8
TAR374G1634 Trochodendron aralioides HOM05D007929 ORTHO05D008690 1.6e-41 175.3 784 27.7
Gohir.D12G221300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 3.6e-41 174.1 730 28.9
MD06G1062900 Malus domestica HOM05D007929 ORTHO05D008690 3.6e-41 174.1 684 28.8
Hma1.2p1_1720F.1_g299300 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 2.3e-40 171.4 258 46.1
vmacro14098 Vaccinium macrocarpon HOM05D007929 ORTHO05D008690 2.3e-40 171.4 718 29.4
Hma1.2p1_1720F.1_g299295 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 5.2e-40 170.2 258 46.1
RcHm_v2.0_Chr7g0202661 Rosa chinensis HOM05D007929 ORTHO05D008690 5.2e-40 170.2 703 28.0
MSTRG.25535 Avicennia marina HOM05D007929 ORTHO05D008690 6.8e-40 169.9 696 29.3
Nn1g01073 Nelumbo nucifera HOM05D007929 ORTHO05D008690 3.4e-39 167.5 783 27.6
Manes.02G036501 Manihot esculenta HOM05D007929 ORTHO05D008690 1.3e-38 165.6 696 29.3
CiPaw.12G107500 Carya illinoinensis HOM05D007929 ORTHO05D008690 1.7e-38 165.2 740 27.8
FAN08G2103 Fragaria x ananassa HOM05D007929 ORTHO05D008690 1.2e-36 159.1 698 27.1
Cfa021312 Carpinus fangiana HOM05D007929 ORTHO05D008690 3.5e-36 157.5 727 28.2
FAN13G1817 Fragaria x ananassa HOM05D007929 ORTHO05D008690 3.5e-36 157.5 703 27.2
Haze_07866 Corylus avellana HOM05D007929 ORTHO05D008690 4.5e-36 157.1 566 31.6
Cc08_g12850 Coffea canephora HOM05D007929 ORTHO05D008690 5.9e-36 156.8 537 30.2
Nn6g34027 Nelumbo nucifera HOM05D007929 ORTHO05D008690 1.3e-35 155.6 769 27.0
FvH4_5g00200 Fragaria vesca HOM05D007929 ORTHO05D008690 2.3e-35 154.8 709 28.2
FAN18G3609 Fragaria x ananassa HOM05D007929 ORTHO05D008690 8.6e-35 152.9 709 28.1
Sed0000260 Sechium edule HOM05D007929 ORTHO05D008690 2.1e-33 148.3 691 26.2
DCAR_027794 Daucus carota HOM05D007929 ORTHO05D008690 1.8e-32 145.2 546 30.2
AUR62007484 Chenopodium quinoa HOM05D007929 ORTHO05D008690 2.0e-31 141.7 715 26.6
FAN04G0968 Fragaria x ananassa HOM05D007929 ORTHO05D008690 1.3e-30 139.0 496 30.2
GSVIVG01004789001 Vitis vinifera HOM05D007929 ORTHO05D008690 8.3e-30 136.3 628 27.9
Eucgr.E00452 Eucalyptus grandis HOM05D007929 ORTHO05D008690 1.8e-29 135.2 723 25.4
AUR62039940 Chenopodium quinoa HOM05D007929 ORTHO05D008690 1.5e-26 125.6 616 28.2
Hund14599 Selenicereus undatus HOM05D007929 ORTHO05D008690 4.3e-26 124.0 681 26.1
ECA233G5449 Erigeron canadensis HOM05D007929 ORTHO05D008690 1.8e-24 118.6 202 39.6
EL10Ac5g13019 Beta vulgaris HOM05D007929 ORTHO05D008690 2.6e-23 114.8 675 27.7
Sc22g0000740 Simmondsia chinensis HOM05D007929 ORTHO05D008690 7.5e-23 113.2 208 35.6
Migut.A00812 Erythranthe guttata HOM05D007929 ORTHO05D008690 6.4e-22 110.2 279 32.6
CsaV3_5G004010 Cucumis sativus L. HOM05D007929 ORTHO05D008690 8.3e-22 109.8 690 24.3
Lsat_1_v5_gn_6_1860 Lactuca sativa HOM05D007929 ORTHO05D008690 1.4e-21 109.0 131 45.8
MELO3C005557.2 Cucumis melo HOM05D007929 ORTHO05D008690 7.0e-21 106.7 695 25.2
HanXRQChr13g0394961 Helianthus annuus HOM05D007929 ORTHO05D008690 2.0e-20 105.1 231 36.8
Ah.12g056550 Amaranthus hybridus HOM05D007929 ORTHO05D008690 6.0e-20 103.6 441 29.9
ClCG01G003880 Citrullus lanatus HOM05D007929 ORTHO05D008690 2.5e-18 98.2 487 26.7
Aa31LG1G2600 Aethionema arabicum HOM05D009328 ORTHO05D008690 2.8e-17 94.7 122 44.3
Sp2g02060 Schrenkiella parvula HOM05D009328 ORTHO05D008690 8.0e-17 93.2 121 39.7
AT1G62530 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 1.1e-16 92.8 175 33.1
arahy.Tifrunner.gnm1.ann1.S80PKI Arachis hypogaea HOM05D007929 ORTHO05D008690 2.3e-16 91.7 138 39.9
Thhalv10024007m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 2.3e-16 91.7 121 43.0
THA.LOC104823548 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 4.0e-16 90.9 304 31.6
Carub.0002s0245 Capsella rubella HOM05D009328 ORTHO05D008690 8.9e-16 89.7 144 38.9
AL2G13340 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 4.4e-15 87.4 183 33.3
BolC8t52307H Brassica oleracea HOM05D009328 ORTHO05D008690 5.8e-15 87.0 124 40.3
A08p32980 Brassica napus HOM05D009328 ORTHO05D008690 7.5e-15 86.7 293 31.7
Sp1g10800 Schrenkiella parvula HOM05D009328 ORTHO05D008690 1.7e-14 85.5 118 41.5
MBI04_g37591_MAGBIO Magnolia biondii HOM05D007929 ORTHO05D008690 2.9e-14 84.7 596 25.5
THA.LOC104818527 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 3.7e-14 84.3 359 30.1
BolC5t29847H Brassica oleracea HOM05D009328 ORTHO05D008690 1.9e-13 82.0 169 38.5
C08p15230 Brassica napus HOM05D009328 ORTHO05D008690 2.4e-13 81.6 293 29.7
BolC8t49153H Brassica oleracea HOM05D009328 ORTHO05D008690 2.4e-13 81.6 293 29.7
BraA08t35218Z Brassica rapa HOM05D009328 ORTHO05D008690 3.2e-13 81.3 295 31.2
C08p47680 Brassica napus HOM05D009328 ORTHO05D008690 5.4e-13 80.5 239 30.1
AT1G12120 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 9.2e-13 79.7 300 31.7
AL1G23390 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 1.2e-12 79.3 322 28.6
HPP92_007417 Vanilla planifolia HOM05D007929 ORTHO05D008690 1.2e-12 79.3 205 34.6
Carub.0001s1181 Capsella rubella HOM05D009328 ORTHO05D008690 2.7e-12 78.2 308 28.6
C05p11050 Brassica napus HOM05D009328 ORTHO05D008690 4.6e-12 77.4 241 32.0
BraA09t41754Z Brassica rapa HOM05D009328 ORTHO05D008690 4.6e-12 77.4 239 28.5
Thhalv10007497m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 6.0e-12 77.0 273 30.0
CARHR012480 Cardamine hirsuta HOM05D009328 ORTHO05D008690 1.7e-11 75.5 222 32.9
HPP92_015027 Vanilla planifolia HOM05D007929 ORTHO05D008690 5.1e-11 73.9 295 28.8
BcaB03g13206 Brassica carinata HOM05D009328 ORTHO05D008690 6.6e-11 73.6 295 27.1
BcaB02g06406 Brassica carinata HOM05D009328 ORTHO05D008690 8.6e-11 73.2 145 37.9
A09p64080 Brassica napus HOM05D009328 ORTHO05D008690 8.6e-11 73.2 279 27.6
BraA06t24123Z Brassica rapa HOM05D009328 ORTHO05D008690 8.6e-11 73.2 260 29.2
BcaC07g41729 Brassica carinata HOM05D009328 ORTHO05D008690 1.1e-10 72.8 260 28.5
A06p09350 Brassica napus HOM05D009328 ORTHO05D008690 2.5e-10 71.6 260 29.2
Lj2A212T45 Lonicera japonica HOM05D007929 ORTHO05D008690 2.5e-10 71.6 335 26.6
BcaB02g06408 Brassica carinata HOM05D009328 ORTHO05D008690 6.2e-09 67.0 266 30.5
FAN02G2125 Fragaria x ananassa HOM05D001536 ORTHO05D001442 1.1e-08 66.2 136 34.6
FAN09G4103 Fragaria x ananassa HOM05D001536 ORTHO05D001442 1.1e-08 66.2 81 45.7
FAN14G2903 Fragaria x ananassa HOM05D001536 ORTHO05D001442 1.4e-08 65.9 159 34.6
FvH4_6g47740 Fragaria vesca HOM05D001536 ORTHO05D001442 1.8e-08 65.5 163 33.1
Duzib264G1081 Durio zibethinus HOM05D001536 ORTHO05D001442 3.1e-08 64.7 81 40.7
CANSAT64G3017 Cannabis sativa HOM05D001536 ORTHO05D001442 5.2e-08 63.9 118 34.7
FAN14G2256 Fragaria x ananassa HOM05D001536 ORTHO05D001442 6.8e-08 63.5 122 37.7
FAN14G5065 Fragaria x ananassa HOM05D001536 ORTHO05D001442 6.8e-08 63.5 122 37.7
FAN05G3557 Fragaria x ananassa HOM05D001536 ORTHO05D001442 1.2e-07 62.8 137 35.0
Duzib147G0949 Durio zibethinus HOM05D001536 ORTHO05D001442 3.4e-07 61.2 81 38.3
DCAR_025403 Daucus carota HOM05D001536 ORTHO05D001442 9.9e-07 59.7 120 33.3
RcHm_v2.0_Chr2g0166861 Rosa chinensis HOM05D001536 ORTHO05D001442 9.9e-07 59.7 100 34.0
Sc04g0002960 Simmondsia chinensis HOM05D001536 ORTHO05D001442 1.7e-06 58.9 108 38.0
CiPaw.04G059000 Carya illinoinensis HOM05D001536 ORTHO05D001442 2.9e-06 58.2 102 36.3
Actinidia01970 Actinidia chinensis HOM05D001536 ORTHO05D001442 4.9e-06 57.4 85 35.3
Prupe.5G199800 Prunus persica HOM05D001536 ORTHO05D001442 6.4e-06 57.0 76 39.5
MD06G1199000 Malus domestica HOM05D001536 ORTHO05D001442 8.3e-06 56.6 87 35.6
TAR622G0794 Trochodendron aralioides HOM05D001536 ORTHO05D001442 8.3e-06 56.6 111 30.6
unitig_21.g20860 Utricularia gibba HOM05D001536 ORTHO05D001442 8.3e-06 56.6 137 29.9


User provided reference genes

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