Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 0.0e+00 1289.6 817 100.0
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 0.0e+00 1220.7 818 89.9
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 0.0e+00 1216.8 818 86.9
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 0.0e+00 1184.1 823 89.7
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 0.0e+00 1166.4 823 87.2
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 0.0e+00 1094.3 820 74.4
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 0.0e+00 1076.2 783 87.0
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.6e-285 986.1 817 71.4
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 3.5e-280 968.4 809 66.1
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.3e-274 949.9 842 69.1
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 1.2e-272 943.3 861 66.0
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 4.6e-272 941.4 807 64.3
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 6.6e-271 937.6 812 67.0
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.1e-270 936.8 811 69.9
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.5e-270 936.4 806 69.6
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 4.3e-270 934.9 812 66.5
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 2.1e-269 932.6 812 68.8
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.4e-268 929.9 806 69.4
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 8.9e-268 927.2 822 65.6
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 2.9e-266 922.2 816 68.8
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 3.2e-265 918.7 812 64.3
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 7.1e-265 917.5 815 65.2
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 7.1e-265 917.5 840 65.4
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 1.6e-264 916.4 845 65.9
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.0e-263 913.7 816 73.7
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.9e-263 911.8 808 65.8
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 4.3e-262 908.3 814 66.2
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 6.2e-261 904.4 825 66.2
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 1.4e-260 903.3 835 60.4
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 6.8e-260 901.0 818 65.3
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 6.8e-260 901.0 826 64.3
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 8.9e-260 900.6 809 66.9
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 5.8e-259 897.9 819 64.3
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 7.6e-259 897.5 807 68.0
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 1.3e-258 896.7 808 69.3
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 1.3e-258 896.7 827 64.1
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 7.1e-257 891.0 831 64.1
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 9.2e-257 890.6 819 67.0
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 1.6e-256 889.8 810 68.0
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.0e-255 887.1 814 64.0
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 2.3e-255 885.9 845 61.9
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 5.1e-255 884.8 827 64.6
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 1.1e-254 883.6 815 66.5
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 1.9e-254 882.9 806 63.3
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 5.6e-254 881.3 820 65.7
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 3.4e-251 872.1 843 69.6
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 4.4e-251 871.7 801 63.8
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.7e-250 869.8 811 66.1
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 6.4e-250 867.8 840 65.4
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 4.2e-249 865.1 815 65.8
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 5.4e-249 864.8 829 61.5
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.2e-248 863.6 820 62.9
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 2.3e-247 859.4 786 65.5
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 6.6e-247 857.8 819 59.6
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 4.3e-246 855.1 827 62.5
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.6e-245 853.2 845 61.1
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 6.2e-245 851.3 818 68.1
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.4e-244 850.1 826 60.4
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 2.4e-244 849.4 834 59.1
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.4e-244 849.4 824 63.5
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 2.6e-243 845.9 810 59.3
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 2.7e-240 835.9 813 66.7
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 2.3e-239 832.8 807 64.4
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 3.0e-239 832.4 832 61.3
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 8.7e-239 830.9 810 60.0
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 1.1e-238 830.5 830 60.1
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 2.1e-237 826.2 826 62.7
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 9.0e-236 820.8 829 58.3
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 1.0e-234 817.4 838 56.6
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 3.2e-233 812.4 812 63.8
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.3e-231 807.0 827 59.1
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 1.3e-231 807.0 825 57.8
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 3.0e-231 805.8 818 58.1
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 8.7e-231 804.3 839 56.6
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.1e-230 803.9 837 58.3
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.9e-230 803.1 803 57.2
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 4.8e-229 798.5 825 57.5
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 1.4e-228 797.0 770 61.4
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 5.8e-227 791.6 836 56.2
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 1.3e-226 790.4 821 57.9
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.3e-226 790.4 832 57.6
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.2e-218 763.1 845 53.1
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 2.9e-218 762.7 685 69.9
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.3e-215 753.1 884 55.8
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.7e-213 746.9 813 58.5
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 2.2e-213 746.5 789 56.0
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 2.0e-211 740.0 819 60.2
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.2e-208 730.7 819 60.4
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.7e-208 729.6 813 51.7
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 6.1e-208 728.4 824 60.3
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 3.0e-207 726.1 824 60.2
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 6.7e-207 724.9 819 57.5
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 6.7e-199 698.4 818 57.1
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 1.5e-198 697.2 651 64.8
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 7.4e-198 694.9 818 56.0
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.8e-196 690.3 817 55.0
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 5.3e-196 688.7 796 52.9
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 4.5e-195 685.6 820 54.6
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 2.3e-191 673.3 817 55.2
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-190 671.0 806 49.9
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 2.0e-190 670.2 806 50.2
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.5e-187 659.4 806 49.5
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 4.5e-187 659.1 907 53.5
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 2.9e-186 656.4 820 53.8
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.2e-184 651.0 813 51.2
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.0e-183 646.4 814 49.9
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 9.8e-182 641.3 857 47.0
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 4.0e-167 592.8 821 49.9
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 5.8e-166 589.0 439 68.3
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 5.4e-164 582.4 633 66.8
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 2.0e-163 580.5 813 47.0
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.8e-160 570.1 768 48.2
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 5.6e-153 545.8 585 64.8
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 4.7e-144 516.2 472 62.9
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 5.4e-140 502.7 737 46.8
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 5.4e-140 502.7 738 48.0
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 7.1e-140 502.3 696 51.1
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 8.1e-128 462.2 562 58.5
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 1.8e-127 461.1 879 46.6
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 9.3e-124 448.7 350 69.1
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 2.6e-118 430.6 473 65.5
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 1.3e-117 428.3 320 68.1
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 2.1e-115 421.0 538 50.7
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.0e-114 418.7 842 39.0
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.9e-113 414.5 532 57.5
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 6.7e-106 389.4 422 65.6
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 4.1e-103 380.2 281 69.4
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 3.8e-101 373.6 456 46.7
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 1.0e-98 365.5 528 43.0
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 3.4e-94 350.5 540 40.0
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 1.3e-93 348.6 804 40.0
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 2.9e-93 347.4 524 41.6
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.6e-86 324.3 524 42.9
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 1.0e-85 322.4 446 45.3
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 2.7e-83 314.3 797 33.5
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 4.5e-62 243.8 505 33.7
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 8.3e-56 223.0 200 63.0
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.8e-51 208.0 397 58.4
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 2.0e-49 201.8 355 50.4
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 3.0e-45 188.0 139 65.5
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 8.3e-40 169.9 180 57.2
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.7e-35 154.1 409 32.8
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 9.9e-33 146.4 137 56.2
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 2.7e-30 138.3 138 55.8
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.2e-27 127.1 307 34.5
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.1e-26 126.3 330 33.0
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 4.4e-25 120.9 136 52.9
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 2.9e-24 118.2 94 59.6
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 1.4e-23 115.9 95 60.0
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.1e-22 112.1 78 71.8
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.3e-21 108.6 220 37.7
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.5e-20 105.1 102 55.9
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.1e-19 102.1 84 58.3
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 4.8e-19 100.9 80 61.2
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.2e-19 100.5 130 45.4
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.2e-19 100.5 76 68.4
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 2.4e-15 88.6 136 45.6
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.6e-14 85.9 78 61.5
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 5.1e-13 80.9 61 65.6
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.1e-13 80.9 352 29.3
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 5.1e-13 80.9 72 55.6
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.7e-13 80.1 153 39.9
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.3e-12 78.2 75 56.0
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.1e-11 75.5 118 41.5
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.8e-11 74.3 603 23.5
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 5.3e-10 70.9 51 80.4
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-09 69.7 164 34.8
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 2.0e-09 68.9 71 54.9
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 2.6e-09 68.6 142 39.4
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.4e-09 68.2 65 52.3
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.8e-09 67.4 80 43.8
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 9.9e-09 66.6 46 65.2
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 1.7e-08 65.9 41 70.7
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 2.2e-08 65.5 69 53.6
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.9e-08 65.1 57 59.6
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.5e-07 60.8 101 37.6


User provided reference genes

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