Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.6e-233 812.4 402 100.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 3.5e-233 811.2 402 99.8
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 3.5e-233 811.2 402 99.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 2.6e-228 795.0 402 96.8
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 5.4e-226 787.3 402 96.0
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.1e-221 773.1 402 92.8
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 2.4e-221 771.9 402 92.8
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 4.4e-220 767.7 402 92.3
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 7.6e-220 766.9 438 87.9
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 92.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 2.4e-218 761.9 402 90.8
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 90.5
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 91.0
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 91.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 91.0
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 90.5
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 90.5
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.5
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.3
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.5
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.5
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.5
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 91.3
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.3
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 90.5
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 91.0
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 89.6
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 90.0
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.1e-215 753.1 402 88.8
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 89.3
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 89.6
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.3
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.5e-215 752.7 402 89.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.5e-215 752.7 402 89.3
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.5e-215 752.7 402 90.3
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 89.3
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 89.3
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 90.0
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 89.8
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.1
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.1
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.1
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.1
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.1
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.1
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.1
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 88.8
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.1
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 90.3
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.8
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 90.0
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 89.6
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 88.8
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 88.8
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 88.8
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 88.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 6.2e-214 747.3 401 88.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 88.6
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 88.6
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 88.6
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 89.1
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.1
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.8
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.1
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 88.6
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 89.1
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 89.8
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 88.6
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 88.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 90.0
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 87.6
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 88.8
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.1
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 89.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 89.1
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 88.8
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 89.3
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.8
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.1
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.6
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 9.0e-213 743.4 416 87.3
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 89.3
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 87.8
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 87.8
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 2.6e-212 741.9 416 87.0
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 89.1
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.1
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.3
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 87.8
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.3
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 87.6
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.3e-211 739.6 411 87.6
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 88.6
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 87.3
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 88.8
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 4.2e-210 734.6 417 86.1
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.1
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 88.6
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 86.6
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 85.8
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.1e-207 726.5 398 86.4
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.3
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 86.3
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.3e-206 723.0 401 87.5
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 3.7e-206 721.5 402 84.8
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 8.1e-206 720.3 402 86.1
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 1.4e-205 719.5 402 85.8
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 1.8e-205 719.2 402 85.3
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 5.3e-205 717.6 429 82.3
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 1.2e-204 716.5 441 80.5
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 3.8e-203 711.4 402 86.1
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 6.5e-203 710.7 402 84.8
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 5.5e-202 707.6 419 83.5
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 3.5e-201 704.9 402 84.3
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 7.9e-201 703.7 400 83.5
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 2.3e-200 702.2 402 82.6
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.3e-198 696.4 402 83.6
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 2.4e-197 692.2 402 84.3
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.2e-196 689.9 375 88.3
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 3.2e-194 681.8 402 83.6
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 5.5e-194 681.0 402 81.6
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.3e-192 675.6 361 91.7
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 8.7e-192 673.7 402 80.1
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 1.1e-189 666.8 402 78.1
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 1.4e-189 666.4 402 79.6
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.8e-189 666.0 357 88.8
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.9e-186 656.0 360 85.8
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 9.7e-183 643.7 340 91.8
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 1.1e-181 640.2 402 78.6
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 4.1e-181 638.3 401 75.1
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 4.1e-181 638.3 402 80.3
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.6e-175 619.0 402 72.6
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 4.4e-175 618.2 402 72.1
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 9.7e-175 617.1 334 88.9
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 2.6e-172 609.0 402 71.9
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.2e-171 605.9 403 71.7
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.0e-171 604.7 403 71.2
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 5.3e-165 584.7 401 68.8
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.2e-164 583.6 402 70.1
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.0e-160 568.5 403 67.0
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 6.1e-153 544.7 289 90.0
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 1.2e-145 520.4 403 67.7
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 1.7e-142 510.0 419 64.9
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 7.3e-138 494.6 402 64.4
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 1.1e-128 464.2 259 85.3
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 1.4e-120 437.2 394 54.1
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.0e-115 421.0 395 53.9
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 1.3e-115 420.6 276 76.4
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 1.5e-103 380.6 229 81.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 2.7e-100 369.8 219 82.6
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.0e-99 367.9 219 81.7
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 2.3e-99 366.7 219 80.8
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.1e-83 312.4 300 53.3
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 8.5e-78 295.0 160 86.9
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.8e-75 287.3 163 84.7
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 2.9e-54 216.9 116 87.9
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 1.2e-31 141.7 86 77.9
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.0e-30 138.7 351 27.6
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.3e-30 137.5 353 28.9
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.2e-17 94.4 47 91.5
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 5.6e-13 79.7 45 75.6
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 5.6e-13 79.7 72 59.7
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-11 74.3 316 22.5
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 3.5e-07 60.5 357 21.3


User provided reference genes

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