Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.1e-191 672.2 339 100.0
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 7.6e-189 663.7 339 99.1
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 2.7e-186 655.2 339 97.1
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.0e-186 654.1 339 95.3
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.3e-185 652.9 339 95.9
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.9e-184 649.0 339 96.5
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 2.0e-181 639.0 339 94.7
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.0e-181 639.0 339 94.7
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 4.5e-181 637.9 339 94.4
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 5.9e-181 637.5 339 94.4
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.2e-178 629.8 339 93.5
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 7.9e-178 627.1 339 92.6
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 1.0e-177 626.7 339 93.2
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.8e-177 625.9 339 91.2
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 3.9e-177 624.8 334 93.4
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 6.7e-177 624.0 336 92.6
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.1e-176 623.2 335 92.8
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 5.7e-176 620.9 334 93.7
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 5.7e-176 620.9 337 91.7
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.3e-175 619.8 339 92.0
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.2e-175 619.0 339 90.9
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.2e-175 619.0 333 92.8
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 2.8e-175 618.6 340 91.2
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.8e-175 618.6 339 90.9
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 2.8e-175 618.6 339 91.7
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 4.8e-175 617.8 336 91.4
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 8.2e-175 617.1 339 90.9
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.1e-174 616.7 338 90.5
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 1.8e-174 615.9 337 90.2
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.8e-174 615.9 339 90.6
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 5.3e-174 614.4 339 90.6
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 6.9e-174 614.0 338 91.1
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 9.1e-174 613.6 342 89.5
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.2e-173 613.2 339 89.7
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.2e-173 613.2 339 90.6
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 1.5e-173 612.8 339 90.3
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 2.0e-173 612.5 339 90.0
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.6e-173 612.1 339 90.6
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.6e-173 612.1 339 89.4
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 3.4e-173 611.7 339 89.7
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 4.5e-173 611.3 340 90.6
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.5e-173 611.3 339 89.4
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 5.9e-173 610.9 339 90.6
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 7.7e-173 610.5 339 89.7
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 7.7e-173 610.5 333 91.6
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 1.0e-172 610.1 339 89.7
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 1.0e-172 610.1 339 89.7
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.0e-172 610.1 333 91.6
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.3e-172 609.8 339 89.7
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 2.2e-172 609.0 333 91.0
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 5.0e-172 607.8 339 89.4
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 5.0e-172 607.8 333 90.7
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 6.5e-172 607.4 339 89.4
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 8.5e-172 607.1 339 89.1
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 8.5e-172 607.1 339 89.1
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 8.5e-172 607.1 339 89.1
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 8.5e-172 607.1 339 88.8
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.9e-171 605.9 339 89.4
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 3.2e-171 605.1 334 90.1
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 4.2e-171 604.7 337 89.0
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 4.2e-171 604.7 339 88.8
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 5.5e-171 604.4 309 97.4
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 7.2e-171 604.0 340 89.7
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 7.2e-171 604.0 340 89.7
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.2e-170 603.2 339 87.9
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.1e-170 602.4 340 89.4
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 2.7e-170 602.1 333 90.4
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 6.1e-170 600.9 339 88.8
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 6.1e-170 600.9 342 88.6
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 6.1e-170 600.9 339 88.2
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 7.9e-170 600.5 341 89.1
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 1.0e-169 600.1 338 88.5
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.8e-169 599.4 339 86.1
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.8e-169 599.4 381 82.2
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.0e-169 598.6 341 88.9
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.9e-169 598.2 339 90.9
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.7e-169 597.4 340 88.5
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 6.7e-169 597.4 336 88.1
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 8.8e-169 597.0 320 92.8
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 3.3e-168 595.1 339 87.0
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 4.4e-168 594.7 333 88.6
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 2.2e-167 592.4 353 85.8
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 6.3e-167 590.9 331 88.5
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 8.2e-167 590.5 309 94.8
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 2.0e-165 585.9 323 91.0
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 3.4e-165 585.1 331 89.1
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 7.7e-165 583.9 333 85.6
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.0e-164 583.6 333 85.6
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.0e-164 583.6 333 86.5
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.3e-164 583.2 339 84.4
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 2.2e-164 582.4 337 84.3
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 2.2e-164 582.4 335 84.8
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 2.9e-164 582.0 333 85.3
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 5.0e-164 581.3 335 84.5
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 5.0e-164 581.3 335 84.8
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 8.5e-164 580.5 333 84.4
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 1.1e-163 580.1 338 83.7
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 1.1e-163 580.1 335 84.5
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.4e-163 579.7 333 85.0
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.9e-163 579.3 333 85.0
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 2.5e-163 578.9 333 84.4
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 4.2e-163 578.2 333 84.7
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 4.2e-163 578.2 333 84.4
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 5.5e-163 577.8 314 91.7
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 9.4e-163 577.0 337 83.7
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.2e-162 576.6 333 84.1
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 3.6e-162 575.1 320 89.7
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 6.1e-162 574.3 333 84.1
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 8.0e-162 573.9 339 86.7
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.0e-161 573.5 333 85.0
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.4e-161 573.2 321 89.7
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 3.9e-161 571.6 326 85.0
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 5.2e-161 571.2 350 80.9
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 8.8e-161 570.5 333 83.8
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 1.5e-160 569.7 334 82.9
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 5.3e-158 561.2 320 86.6
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.2e-157 560.1 343 80.5
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 4.7e-154 548.1 316 84.2
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 6.1e-154 547.7 335 79.1
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 1.0e-153 547.0 339 82.6
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.0e-153 547.0 376 77.7
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 4.4e-152 541.6 333 78.1
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.2e-151 539.3 345 77.7
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 2.4e-150 535.8 421 69.4
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 7.0e-150 534.3 335 77.6
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 4.5e-149 531.6 335 77.0
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 6.1e-146 521.2 363 73.8
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 3.5e-141 505.4 339 79.1
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 2.3e-140 502.7 271 91.5
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 9.5e-139 497.3 263 94.7
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.8e-138 495.7 266 94.0
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.8e-138 495.7 266 94.0
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 3.6e-138 495.4 289 85.1
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.3e-135 486.9 321 73.2
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 4.7e-130 468.4 339 73.7
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.0e-129 467.2 339 73.2
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.0e-124 449.1 341 68.0
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 8.9e-121 437.6 238 89.1
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 3.2e-118 429.1 251 82.5
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 6.6e-116 421.4 333 60.7
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.8e-114 416.0 251 82.9
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 6.0e-109 398.3 249 78.7
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 3.0e-108 396.0 216 89.4
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.8e-105 386.7 317 59.3
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.9e-102 376.7 332 58.4
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 4.2e-54 216.1 128 83.6
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.2e-44 182.6 164 63.4
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 5.7e-35 152.5 180 53.9
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 3.8e-31 139.8 79 84.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.8e-28 131.0 74 83.8
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 9.8e-27 125.2 73 82.2
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 6.3e-26 122.5 74 81.1
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 3.0e-20 103.6 110 55.5
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.2e-16 91.7 51 88.2
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 1.8e-12 77.8 99 46.5
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 6.8e-12 75.9 42 83.3
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 1.7e-10 71.2 57 66.7
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.4e-09 68.2 118 39.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 2.4e-09 67.4 60 60.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 2.4e-09 67.4 60 60.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.9e-06 57.8 125 36.0


User provided reference genes

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