Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004508 Solanum tuberosum HOM05D002370 ORTHO05D018204 2.4e-59 231.9 112 100.0
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 2.3e-49 198.7 110 88.2
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 2.3e-49 198.7 110 88.2
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 2.3e-49 198.7 110 88.2
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 8.7e-49 196.8 110 87.3
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 8.7e-49 196.8 110 87.3
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 8.7e-49 196.8 110 87.3
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 8.7e-49 196.8 110 87.3
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 2.8e-47 191.8 110 84.5
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 4.8e-47 191.0 110 84.5
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 6.3e-47 190.7 110 83.6
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 1.1e-46 189.9 110 84.5
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 2.4e-46 188.7 110 83.6
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 5.3e-46 187.6 108 85.2
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 6.9e-46 187.2 110 83.6
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 6.9e-46 187.2 110 83.6
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 9.0e-46 186.8 110 84.5
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 1.2e-45 186.4 110 82.7
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 1.2e-45 186.4 110 83.6
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 1.2e-45 186.4 110 83.6
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 1.5e-45 186.0 110 83.6
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.5e-45 186.0 110 82.7
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 1.5e-45 186.0 110 82.7
Cpa.g.sc520.1 Carica papaya HOM05D002370 ORTHO05D003878 2.0e-45 185.7 110 82.7
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 2.0e-45 185.7 110 82.7
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 2.6e-45 185.3 110 82.7
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 2.6e-45 185.3 110 82.7
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 2.6e-45 185.3 110 82.7
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 2.6e-45 185.3 110 81.8
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 2.6e-45 185.3 110 82.7
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 3.4e-45 184.9 110 82.7
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 4.5e-45 184.5 110 82.7
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 4.5e-45 184.5 110 82.7
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 4.5e-45 184.5 110 81.8
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 4.5e-45 184.5 110 81.8
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 4.5e-45 184.5 110 81.8
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 4.5e-45 184.5 110 82.7
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 4.5e-45 184.5 110 82.7
CDE06G2553 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 7.6e-45 183.7 110 80.9
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 7.6e-45 183.7 110 82.7
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 7.6e-45 183.7 110 80.9
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 7.6e-45 183.7 110 82.7
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 7.6e-45 183.7 110 82.7
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.0e-44 183.3 110 81.8
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.0e-44 183.3 110 80.9
Haze_10317 Corylus avellana HOM05D002370 ORTHO05D003878 1.0e-44 183.3 110 81.8
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 1.0e-44 183.3 110 82.7
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 1.3e-44 183.0 110 81.8
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 1.7e-44 182.6 110 81.8
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 1.7e-44 182.6 110 81.8
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 1.7e-44 182.6 108 83.3
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 1.7e-44 182.6 108 83.3
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 1.7e-44 182.6 108 83.3
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 1.7e-44 182.6 110 80.9
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 1.7e-44 182.6 110 81.8
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 2.2e-44 182.2 110 80.9
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 2.2e-44 182.2 110 80.9
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 2.2e-44 182.2 108 83.3
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 2.2e-44 182.2 110 81.8
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 2.2e-44 182.2 110 81.8
SEGI_17280 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.2e-44 182.2 110 80.9
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 3.8e-44 181.4 110 81.8
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 5.0e-44 181.0 110 80.9
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 6.5e-44 180.6 110 80.0
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 6.5e-44 180.6 110 80.9
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 6.5e-44 180.6 110 80.0
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 8.5e-44 180.3 110 80.0
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 8.5e-44 180.3 110 80.9
EL10Ac5g12235 Beta vulgaris HOM05D002370 ORTHO05D003878 8.5e-44 180.3 108 82.4
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 8.5e-44 180.3 110 80.0
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 8.5e-44 180.3 110 80.0
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 8.5e-44 180.3 110 80.9
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 1.1e-43 179.9 110 80.9
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 1.4e-43 179.5 110 80.9
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 1.4e-43 179.5 110 80.9
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 1.4e-43 179.5 110 79.1
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.4e-43 179.5 110 80.0
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.4e-43 179.5 110 80.0
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 2.5e-43 178.7 110 80.9
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 2.5e-43 178.7 110 80.0
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 2.5e-43 178.7 110 80.9
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 3.2e-43 178.3 108 81.5
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 3.2e-43 178.3 110 79.1
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 4.2e-43 177.9 110 80.9
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 9.3e-43 176.8 108 77.8
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 1.2e-42 176.4 110 80.9
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 1.2e-42 176.4 110 78.2
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.2e-42 176.4 108 80.6
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 1.6e-42 176.0 110 80.0
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 2.1e-42 175.6 110 80.9
Gohir.A01G009500 Gossypium hirsutum HOM05D002370 ORTHO05D003878 3.6e-42 174.9 110 79.1
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 3.6e-42 174.9 110 79.1
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 3.6e-42 174.9 110 79.1
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 4.6e-42 174.5 110 79.1
Actinidia00351 Actinidia chinensis HOM05D002370 ORTHO05D003878 6.1e-42 174.1 110 79.1
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 6.1e-42 174.1 110 78.2
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 7.9e-42 173.7 110 79.1
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.5e-40 169.5 108 75.9
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 1.9e-40 169.1 108 75.9
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 2.8e-39 165.2 110 76.4
vmacro01938 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 3.1e-38 161.8 110 76.4
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 9.1e-38 160.2 108 72.2
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 6.5e-36 154.1 110 72.7
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 6.5e-36 154.1 90 82.2
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 8.5e-36 153.7 120 65.8
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 1.1e-35 153.3 108 69.4
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 7.9e-34 147.1 92 79.3
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 6.7e-33 144.1 114 66.7
Eucgr.C04378 Eucalyptus grandis HOM05D002370 ORTHO05D003878 2.6e-32 142.1 110 69.1
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 3.3e-32 141.7 88 78.4
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 5.7e-32 141.0 105 64.8
Solyc01g106860.4 Solanum lycopersicum HOM05D002370 ORTHO05D018204 1.1e-30 136.7 82 84.1
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 2.9e-28 128.6 106 58.5
SalBow6G7047 Salvia bowleyana HOM05D002370 ORTHO05D003878 2.5e-27 125.6 109 66.1
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 7.2e-27 124.0 108 57.4
CSS0020690 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D018204 8.8e-25 117.1 84 67.9
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 1.5e-24 116.3 106 54.7
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 7.4e-24 114.0 106 57.5
CSS0024075 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D018204 2.8e-23 112.1 84 64.3
Sopen01g049150 Solanum pennellii HOM05D000046 ORTHO05D004973 1.3e-20 103.2 69 76.8
Actinidia35621 Actinidia chinensis HOM05D002370 ORTHO05D018204 3.0e-17 92.0 90 56.7
Lsat_1_v5_gn_9_63081 Lactuca sativa HOM05D002370 ORTHO05D018204 1.5e-16 89.7 104 51.0
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 2.2e-12 75.9 133 40.6
PGSC0003DMG400008758 Solanum tuberosum HOM05D002370 ORTHO05D022851 6.1e-10 67.8 96 41.7
Glyma.09G081460 Glycine max HOM05D002370 ORTHO05D018204 1.5e-08 63.2 38 81.6


User provided reference genes

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