Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.2e-71 271.9 170 100.0
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.7e-70 268.9 170 99.4
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.7e-70 268.9 170 99.4
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.7e-68 261.2 170 95.3
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 7.5e-68 260.8 170 94.7
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.8e-66 256.1 170 95.3
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 6.8e-61 237.7 174 86.8
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 9.2e-58 227.3 171 81.9
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.5e-55 219.2 170 78.8
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 9.2e-50 200.7 169 71.6
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 9.2e-50 200.7 169 72.8
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 6.6e-48 194.5 164 74.4
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 1.5e-47 193.4 166 74.7
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.5e-47 192.6 170 72.4
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 8.0e-46 187.6 166 72.3
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.4e-45 186.8 163 67.5
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.8e-45 186.4 150 79.3
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 3.4e-44 182.2 163 73.0
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 3.4e-44 182.2 168 72.0
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 4.4e-44 181.8 167 71.3
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 9.8e-44 180.6 159 74.2
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.3e-43 180.3 175 68.0
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.7e-43 179.9 161 73.9
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.9e-43 179.1 168 69.6
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 2.9e-43 179.1 170 65.9
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 6.4e-43 177.9 170 70.0
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 8.3e-43 177.6 166 55.4
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.4e-42 176.8 172 67.4
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.2e-41 173.7 169 71.6
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.6e-41 173.3 143 77.6
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 2.0e-41 172.9 171 69.0
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.3e-40 170.2 175 66.9
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.3e-40 170.2 162 75.3
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-39 167.2 170 71.8
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 2.5e-39 166.0 172 67.4
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 3.3e-39 165.6 162 68.5
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 3.3e-39 165.6 162 68.5
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 3.3e-39 165.6 170 55.3
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 3.6e-38 162.2 154 68.8
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 3.6e-38 162.2 154 68.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 3.6e-38 162.2 154 68.8
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 3.6e-38 162.2 163 64.4
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 4.7e-38 161.8 159 54.1
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 3.1e-37 159.1 158 68.4
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 4.0e-37 158.7 162 67.3
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.6e-36 156.0 163 66.3
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 2.6e-36 156.0 173 50.9
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.6e-36 156.0 173 50.9
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.6e-36 156.0 173 50.9
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 3.4e-36 155.6 148 68.9
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 5.8e-36 154.8 153 53.6
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.8e-36 154.8 153 53.6
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 7.5e-36 154.5 182 51.6
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.3e-35 153.7 153 52.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.3e-35 153.7 160 68.1
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.2e-35 152.9 173 50.3
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 3.7e-35 152.1 170 58.2
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.4e-35 151.4 158 51.3
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 8.3e-35 151.0 238 40.3
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.9e-34 149.8 173 61.3
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.4e-34 149.4 148 65.5
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 4.1e-34 148.7 149 64.4
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 4.1e-34 148.7 170 62.4
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 5.4e-34 148.3 169 58.0
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 5.4e-34 148.3 168 51.2
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 7.1e-34 147.9 169 52.7
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 7.1e-34 147.9 165 49.7
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 9.2e-34 147.5 162 63.6
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.2e-33 147.1 172 58.7
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 2.7e-33 146.0 160 64.4
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.7e-33 146.0 172 60.5
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 2.7e-33 146.0 163 65.0
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.5e-33 145.6 172 58.7
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 4.6e-33 145.2 171 59.1
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 6.0e-33 144.8 170 60.0
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 7.8e-33 144.4 175 48.0
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.0e-32 144.1 173 48.0
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.7e-32 143.3 163 65.0
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.7e-32 143.3 163 65.0
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 3.0e-32 142.5 172 62.8
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 3.0e-32 142.5 161 59.0
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 3.9e-32 142.1 170 59.4
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 6.6e-32 141.4 170 44.1
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.1e-31 140.6 173 60.1
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.1e-31 140.6 164 63.4
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.1e-31 140.6 164 63.4
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.1e-31 140.6 164 63.4
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.9e-31 139.8 163 61.3
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 2.5e-31 139.4 163 57.7
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 3.3e-31 139.0 163 62.0
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 3.3e-31 139.0 161 63.4
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 3.3e-31 139.0 173 60.1
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 9.5e-31 137.5 160 63.1
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 9.5e-31 137.5 173 45.7
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 9.5e-31 137.5 175 60.6
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 9.5e-31 137.5 126 70.6
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.2e-30 137.1 162 59.9
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 2.8e-30 136.0 165 58.8
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 2.8e-30 136.0 160 47.5
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 2.8e-30 136.0 175 58.9
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 2.8e-30 136.0 175 58.9
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 3.6e-30 135.6 164 64.0
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 3.6e-30 135.6 171 57.9
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 4.7e-30 135.2 170 58.8
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 6.2e-30 134.8 173 56.6
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 8.1e-30 134.4 173 57.2
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 8.1e-30 134.4 163 60.7
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 1.1e-29 134.0 171 57.3
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.8e-29 133.3 81 76.5
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 3.1e-29 132.5 160 48.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 4.0e-29 132.1 173 56.6
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 4.0e-29 132.1 163 62.0
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 4.0e-29 132.1 170 62.4
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.8e-29 131.3 175 58.9
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 1.5e-28 130.2 163 58.9
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 3.4e-28 129.0 173 43.9
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.3e-27 127.1 160 61.9
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 1.3e-27 127.1 169 55.0
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 1.3e-27 127.1 162 61.7
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.2e-27 126.3 173 52.0
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 8.4e-27 124.4 162 61.7
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 8.4e-27 124.4 166 42.8
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.1e-26 124.0 169 50.9
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.1e-26 124.0 126 70.6
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.9e-26 123.2 159 60.4
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 1.9e-26 123.2 164 59.1
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.9e-26 123.2 163 58.3
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 2.4e-26 122.9 162 59.9
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 3.2e-26 122.5 164 59.1
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 3.2e-26 122.5 164 59.1
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.2e-26 122.5 159 44.7
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 4.1e-26 122.1 164 58.5
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.0e-24 117.5 165 57.6
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 3.9e-24 115.5 73 68.5
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.1e-23 114.0 160 59.4
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.6e-22 110.2 142 61.3
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.6e-22 110.2 142 61.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 2.1e-22 109.8 124 44.4
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 3.6e-22 109.0 171 52.6
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.4e-21 107.1 66 75.8
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 6.9e-21 104.8 65 75.4
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 3.8e-19 99.0 126 58.7
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.9e-18 96.7 129 44.2
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.6e-17 93.6 132 41.7
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 3.6e-14 82.4 145 37.2
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 8.1e-14 81.3 135 38.5
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 1.4e-13 80.5 97 70.1
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.6e-12 76.3 71 53.5
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 8.4e-11 71.2 152 32.2
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 1.0e-08 64.3 59 57.6


User provided reference genes

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