Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 1.2e-71 273.1 141 100.0
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 4.0e-67 258.1 141 94.3
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 6.9e-67 257.3 141 94.3
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 8.7e-62 240.4 141 87.2
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 8.1e-60 233.8 141 86.5
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 3.8e-57 224.9 141 83.7
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 4.9e-57 224.6 141 83.0
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 8.4e-57 223.8 141 82.3
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 1.4e-56 223.0 141 81.6
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 2.4e-56 222.2 141 82.3
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 1.9e-53 212.6 141 78.7
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 9.6e-53 210.3 138 79.0
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 2.2e-49 199.1 142 76.1
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 9.3e-48 193.7 142 72.5
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 9.3e-48 193.7 142 72.5
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 1.6e-47 193.0 142 71.8
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 2.7e-47 192.2 142 70.4
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 4.6e-47 191.4 141 73.0
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 4.6e-47 191.4 142 71.8
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 6.0e-47 191.0 142 71.1
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 6.0e-47 191.0 143 72.7
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 2.3e-46 189.1 142 70.4
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 2.3e-46 189.1 142 70.4
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 3.9e-46 188.3 130 76.9
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 3.9e-46 188.3 130 76.9
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 5.1e-46 188.0 141 70.9
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 6.7e-46 187.6 142 71.1
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 8.7e-46 187.2 142 70.4
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 1.9e-45 186.0 141 68.1
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 3.3e-45 185.3 130 76.2
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 3.3e-45 185.3 144 68.1
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 5.6e-45 184.5 141 68.8
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 1.6e-44 183.0 134 73.1
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 2.1e-44 182.6 142 69.7
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 2.1e-44 182.6 141 70.2
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.1e-44 182.6 133 74.4
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 2.8e-44 182.2 142 69.7
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.7e-44 181.8 141 72.3
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 3.7e-44 181.8 136 72.1
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 4.8e-44 181.4 141 69.5
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 4.8e-44 181.4 141 71.6
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 4.8e-44 181.4 124 77.4
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 6.2e-44 181.0 141 67.4
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 6.2e-44 181.0 142 69.0
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 8.1e-44 180.6 134 72.4
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 8.1e-44 180.6 142 69.0
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 1.1e-43 180.3 127 74.8
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 1.4e-43 179.9 154 65.6
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 1.8e-43 179.5 142 69.0
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 4.0e-43 178.3 166 62.0
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 5.3e-43 177.9 141 71.6
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 5.3e-43 177.9 142 69.0
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 9.0e-43 177.2 144 67.4
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 9.0e-43 177.2 144 67.4
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.2e-42 176.8 141 70.2
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 2.0e-42 176.0 141 70.2
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 2.6e-42 175.6 141 66.7
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 3.4e-42 175.3 142 67.6
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 3.4e-42 175.3 151 65.6
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 4.5e-42 174.9 134 70.9
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 5.8e-42 174.5 144 69.4
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 5.8e-42 174.5 136 69.1
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 5.8e-42 174.5 141 66.0
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 1.0e-41 173.7 142 67.6
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 1.3e-41 173.3 146 64.4
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 1.7e-41 172.9 122 73.8
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 2.9e-41 172.2 142 65.5
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 2.9e-41 172.2 148 65.5
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 3.8e-41 171.8 134 69.4
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 4.9e-41 171.4 141 66.0
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 4.9e-41 171.4 141 66.0
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 1.4e-40 169.9 135 68.1
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 3.2e-40 168.7 146 65.8
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 5.5e-40 167.9 136 67.6
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 5.5e-40 167.9 143 64.3
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 5.5e-40 167.9 135 68.1
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 5.5e-40 167.9 126 71.4
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 7.1e-40 167.5 145 63.4
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 7.1e-40 167.5 145 63.4
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 7.1e-40 167.5 116 76.7
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 9.3e-40 167.2 111 80.2
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 2.1e-39 166.0 142 64.8
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 1.0e-38 163.7 143 63.6
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 1.0e-38 163.7 124 70.2
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 1.0e-38 163.7 146 61.6
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 2.3e-38 162.5 126 69.8
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.1e-38 161.4 119 71.4
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 8.7e-38 160.6 119 70.6
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 8.7e-38 160.6 121 69.4
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 1.1e-37 160.2 129 64.3
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 2.5e-37 159.1 163 58.9
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 3.3e-37 158.7 142 62.0
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 7.4e-37 157.5 119 69.7
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 1.8e-35 152.9 150 58.0
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 9.0e-35 150.6 119 66.4
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 1.5e-34 149.8 149 58.4
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 2.0e-34 149.4 128 67.2
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 1.0e-33 147.1 118 66.9
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 4.2e-32 141.7 119 66.4
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 1.0e-30 137.1 118 63.6
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 6.7e-30 134.4 117 65.0
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 1.5e-29 133.3 121 57.0
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 9.7e-29 130.6 131 55.0
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 8.2e-28 127.5 104 71.2
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 6.9e-27 124.4 150 52.7
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 6.9e-27 124.4 117 54.7
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 1.2e-26 123.6 85 74.1
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 4.5e-26 121.7 128 58.6
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 7.7e-26 120.9 80 80.0
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 1.0e-25 120.6 95 69.5
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 1.0e-25 120.6 128 57.8
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 1.3e-25 120.2 128 57.8
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 1.3e-25 120.2 83 77.1
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 1.3e-25 120.2 84 75.0
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 1.7e-25 119.8 128 57.8
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 1.7e-25 119.8 119 60.5
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 1.7e-25 119.8 128 58.6
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 2.2e-25 119.4 128 57.8
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 3.8e-25 118.6 119 59.7
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 3.8e-25 118.6 93 71.0
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 2.5e-24 115.9 112 58.9
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 1.4e-22 110.2 147 47.6
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 3.9e-22 108.6 117 52.1
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 3.9e-22 108.6 70 78.6
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 8.8e-22 107.5 88 61.4
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 8.2e-20 100.9 136 43.4
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 1.8e-19 99.8 73 74.0
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 1.2e-18 97.1 163 41.1
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 7.4e-13 77.8 111 45.0
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 2.8e-12 75.9 86 51.2
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 8.2e-12 74.3 91 50.5
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.3e-09 67.0 63 55.6
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 3.8e-09 65.5 85 50.6
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.3e-06 56.2 42 69.0


User provided reference genes

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