Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.7e-160 568.2 291 100.0
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 9.6e-148 526.9 294 92.2
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 8.4e-144 513.8 294 89.8
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.5e-140 502.3 294 87.4
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 2.9e-136 488.8 295 84.7
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 3.9e-133 478.4 296 82.1
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 3.9e-133 478.4 296 82.1
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 4.3e-132 474.9 296 81.4
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 6.9e-130 467.6 293 81.9
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 9.0e-130 467.2 294 82.0
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 7.6e-129 464.2 296 81.1
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.9e-126 454.1 293 78.2
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.8e-125 453.0 293 78.5
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 2.3e-125 452.6 294 79.9
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.0e-125 452.2 293 77.8
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.0e-125 452.2 293 77.8
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 5.1e-125 451.4 295 78.3
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 1.3e-123 446.8 293 76.5
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 1.6e-123 446.4 297 78.8
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 3.7e-123 445.3 293 77.8
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 6.2e-123 444.5 293 77.5
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.4e-122 443.4 296 77.4
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 9.0e-122 440.7 293 77.5
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.2e-121 440.3 294 77.6
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 2.0e-121 439.5 293 78.2
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 5.8e-121 438.0 295 75.3
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.7e-120 436.4 295 76.3
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.1e-119 433.7 297 75.8
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.5e-119 432.6 299 75.9
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 3.2e-119 432.2 295 74.9
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 4.2e-119 431.8 295 74.9
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 4.2e-119 431.8 295 74.9
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 4.2e-119 431.8 293 76.1
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 5.5e-119 431.4 298 75.2
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 9.3e-119 430.6 299 75.6
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.2e-118 430.3 293 74.7
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.6e-118 429.9 294 74.8
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.6e-118 429.9 294 74.8
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.1e-118 429.5 298 74.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.1e-118 429.5 298 74.8
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 2.7e-118 429.1 296 74.7
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.7e-118 429.1 298 74.5
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 3.5e-118 428.7 298 74.5
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 7.9e-118 427.6 293 74.4
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.0e-117 427.2 293 74.4
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.3e-117 426.8 293 74.1
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.3e-117 426.8 295 75.3
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 8.7e-117 424.1 293 75.4
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 8.7e-117 424.1 296 74.3
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.1e-116 423.7 295 74.2
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.9e-116 422.9 294 76.5
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.9e-116 422.9 300 72.3
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 2.5e-116 422.5 298 73.8
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 4.3e-116 421.8 297 75.4
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 7.4e-116 421.0 295 74.2
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.2e-115 419.5 298 73.5
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 6.3e-115 417.9 295 71.9
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 6.3e-115 417.9 295 72.5
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.1e-114 417.2 294 74.1
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.1e-114 417.2 295 72.9
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.1e-114 417.2 294 71.8
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.4e-114 416.8 294 73.1
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.8e-114 416.4 295 72.2
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 4.1e-114 415.2 294 73.1
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 4.1e-114 415.2 293 73.7
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 1.2e-113 413.7 297 73.4
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 7.7e-113 411.0 294 72.4
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 7.7e-113 411.0 294 72.1
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.3e-112 410.2 293 72.4
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.3e-112 410.2 293 71.7
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 5.0e-112 408.3 297 70.0
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.4e-111 406.8 331 67.1
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.9e-111 406.4 293 71.3
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 5.5e-111 404.8 299 72.9
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 5.5e-111 404.8 295 70.8
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 7.2e-111 404.4 291 70.1
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 2.1e-110 402.9 295 73.6
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 7.9e-110 401.0 292 70.5
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.8e-109 399.8 291 70.4
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 8.8e-109 397.5 296 69.3
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 2.5e-108 396.0 295 69.8
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 3.3e-108 395.6 296 70.3
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.3e-108 395.6 291 69.8
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.3e-108 395.6 296 68.9
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 4.3e-108 395.2 295 69.5
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 9.7e-108 394.0 291 69.8
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 9.7e-108 394.0 291 68.0
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 1.7e-107 393.3 296 69.3
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.2e-107 392.9 293 71.7
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 6.3e-107 391.3 296 68.2
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 6.3e-107 391.3 296 69.3
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 8.2e-107 391.0 296 68.9
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.1e-106 390.6 297 68.7
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-106 390.6 298 68.1
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.4e-106 390.2 296 68.6
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.8e-106 389.8 296 68.9
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.8e-106 389.8 296 69.3
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.4e-106 389.4 296 69.6
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 6.9e-106 387.9 295 69.8
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.6e-105 386.0 317 64.0
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 5.9e-105 384.8 291 67.7
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 7.7e-105 384.4 296 68.2
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 7.7e-105 384.4 296 67.6
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.0e-104 384.0 296 67.6
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.3e-104 383.6 293 69.6
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.9e-104 382.5 301 68.1
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 3.8e-104 382.1 298 70.5
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.9e-103 379.8 296 67.9
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 9.4e-103 377.5 297 66.3
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.2e-102 377.1 295 67.1
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 4.7e-102 375.2 325 62.2
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.3e-101 372.9 296 66.9
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.9e-101 372.1 295 69.8
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 2.0e-100 369.8 298 65.4
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 2.6e-100 369.4 298 65.1
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.7e-99 366.7 291 67.0
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 4.8e-99 365.2 296 63.5
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 4.1e-98 362.1 291 62.9
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.5e-97 360.1 296 63.5
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 4.7e-94 348.6 306 65.7
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.0e-85 319.3 291 59.8
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 4.0e-85 318.9 269 63.6
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.1e-82 310.8 291 58.1
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.4e-79 297.7 410 45.9
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.5e-76 290.4 255 61.6
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.8e-75 286.2 329 50.5
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 5.4e-74 282.0 299 55.9
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.5e-71 273.1 292 51.0
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.5e-71 273.1 292 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 9.5e-71 271.2 286 53.1
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 7.5e-68 261.5 297 54.2
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 5.2e-61 238.8 273 52.0
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 3.9e-56 222.6 298 48.7
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 3.1e-53 213.0 295 43.4
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 6.2e-46 188.7 321 40.8
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.5e-39 167.5 199 51.3
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 1.6e-33 147.5 93 83.9
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.3e-27 127.9 163 47.9
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.9e-24 116.3 82 73.2
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.6e-24 115.5 81 76.5
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.9e-23 114.0 95 57.9
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 2.5e-23 113.6 69 82.6
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 3.3e-23 113.2 93 64.5
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.6e-20 102.1 77 71.4
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.8e-13 80.9 77 61.0
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 3.4e-12 76.6 295 30.2
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.3e-11 74.7 260 28.5
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.5e-10 70.5 55 67.3
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 2.1e-09 67.4 38 78.9
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 3.5e-09 66.6 292 28.4
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 2.1e-06 57.4 94 38.3


User provided reference genes

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