Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.6e-70 269.2 133 100.0
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 3.7e-62 241.5 158 79.7
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 3.0e-56 221.9 131 81.7
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 1.4e-53 213.0 133 81.2
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 1.2e-52 209.9 132 78.8
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 1.5e-52 209.5 131 74.8
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 2.6e-52 208.8 131 75.6
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 3.4e-52 208.4 131 75.6
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 2.5e-50 202.2 128 73.4
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 1.2e-49 199.9 131 71.8
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 4.7e-49 198.0 133 71.4
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 7.9e-49 197.2 128 71.9
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 7.9e-49 197.2 128 73.4
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 1.8e-48 196.1 129 69.8
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 3.9e-48 194.9 133 66.2
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 3.9e-48 194.9 133 70.7
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 5.1e-48 194.5 128 71.1
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 5.1e-48 194.5 133 69.2
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 5.1e-48 194.5 133 68.4
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 5.1e-48 194.5 133 70.7
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 5.1e-48 194.5 133 66.2
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 6.7e-48 194.1 126 70.6
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 6.7e-48 194.1 127 69.3
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 6.7e-48 194.1 128 71.1
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 6.7e-48 194.1 131 74.0
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 8.8e-48 193.7 131 68.7
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 8.8e-48 193.7 128 71.9
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 1.5e-47 193.0 131 68.7
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 1.5e-47 193.0 133 70.7
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 2.0e-47 192.6 133 69.9
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 2.6e-47 192.2 133 68.4
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 2.6e-47 192.2 133 67.7
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 4.4e-47 191.4 131 69.5
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 4.4e-47 191.4 133 66.9
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 4.4e-47 191.4 133 66.9
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 4.4e-47 191.4 128 69.5
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 4.4e-47 191.4 133 66.2
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 7.4e-47 190.7 133 69.2
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 1.3e-46 189.9 128 68.8
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 1.7e-46 189.5 133 68.4
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 1.7e-46 189.5 133 66.9
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.7e-46 189.5 128 68.8
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.7e-46 189.5 128 68.8
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.7e-46 189.5 133 66.2
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 2.8e-46 188.7 128 68.0
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 2.8e-46 188.7 133 67.7
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.8e-46 188.7 128 68.0
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 3.7e-46 188.3 132 66.7
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 3.7e-46 188.3 133 67.7
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 4.8e-46 188.0 128 69.5
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 6.3e-46 187.6 132 66.7
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 6.3e-46 187.6 125 70.4
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 8.2e-46 187.2 128 66.4
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 1.1e-45 186.8 128 67.2
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 1.1e-45 186.8 133 66.9
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 1.4e-45 186.4 131 68.7
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.8e-45 186.0 133 64.7
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 1.8e-45 186.0 133 65.4
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 2.4e-45 185.7 129 68.2
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 3.1e-45 185.3 141 64.5
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 3.1e-45 185.3 128 66.4
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 4.1e-45 184.9 127 67.7
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 5.3e-45 184.5 128 68.0
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 5.3e-45 184.5 128 68.0
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 5.3e-45 184.5 128 68.0
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 5.3e-45 184.5 128 67.2
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 5.3e-45 184.5 128 67.2
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 7.0e-45 184.1 128 66.4
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 7.0e-45 184.1 128 67.2
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 7.0e-45 184.1 132 63.6
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 7.0e-45 184.1 128 68.8
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 7.0e-45 184.1 125 68.8
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 1.2e-44 183.3 128 67.2
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 1.2e-44 183.3 129 66.7
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 1.2e-44 183.3 133 64.7
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 1.2e-44 183.3 128 66.4
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.5e-44 183.0 125 67.2
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 1.5e-44 183.0 128 65.6
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 1.5e-44 183.0 128 65.6
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 1.5e-44 183.0 128 67.2
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 2.0e-44 182.6 128 66.4
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 2.0e-44 182.6 125 66.4
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 2.0e-44 182.6 125 66.4
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 2.0e-44 182.6 132 63.6
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 7.7e-44 180.6 133 66.2
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 1.0e-43 180.3 123 65.9
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 1.3e-43 179.9 128 68.0
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 1.3e-43 179.9 127 65.4
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 1.7e-43 179.5 128 68.0
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 3.8e-43 178.3 131 64.1
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 3.8e-43 178.3 131 64.1
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 5.0e-43 177.9 137 64.2
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 5.0e-43 177.9 128 65.6
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 1.4e-42 176.4 131 64.9
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 1.4e-42 176.4 138 63.0
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 2.5e-42 175.6 137 62.0
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 3.2e-42 175.3 125 66.4
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 3.2e-42 175.3 141 61.7
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 3.2e-42 175.3 126 65.9
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 5.5e-42 174.5 133 63.2
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 7.2e-42 174.1 137 61.3
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 7.2e-42 174.1 134 64.2
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-41 173.3 135 61.5
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 1.2e-41 173.3 135 61.5
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 1.2e-41 173.3 133 62.4
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 2.1e-41 172.6 133 63.2
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 3.0e-40 168.7 131 65.6
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 6.7e-40 167.5 128 60.2
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 1.1e-39 166.8 128 59.4
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.5e-39 166.4 129 62.8
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 2.4e-37 159.1 133 57.1
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.6e-36 155.6 93 80.6
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 4.5e-36 154.8 133 56.4
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 7.7e-36 154.1 172 47.7
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 2.9e-35 152.1 136 56.6
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 1.1e-34 150.2 136 55.1
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 1.9e-34 149.4 100 67.0
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 2.3e-32 142.5 95 72.6
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 8.8e-32 140.6 126 58.7
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 3.4e-31 138.7 125 57.6
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 1.1e-29 133.7 77 84.4
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.3e-24 115.9 72 75.0
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 1.4e-21 106.7 118 44.1
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.8e-21 106.3 62 79.0
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.8e-21 106.3 62 79.0
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 1.7e-19 99.8 62 72.6
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 2.9e-19 99.0 72 63.9
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 2.9e-19 99.0 65 69.2
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 6.6e-19 97.8 62 71.0
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.5e-18 96.7 75 60.0
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 1.5e-18 96.7 67 65.7
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 3.3e-18 95.5 76 59.2
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 3.3e-18 95.5 71 63.4
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 3.3e-18 95.5 66 62.1
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 4.2e-18 95.1 53 84.9
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.2e-17 93.6 75 58.7
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 1.2e-17 93.6 75 60.0
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 2.1e-17 92.8 67 62.7
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.8e-16 89.7 71 60.6
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 3.0e-16 89.0 64 65.6
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 1.6e-12 76.6 116 37.1
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 3.5e-12 75.5 62 51.6
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 2.3e-11 72.8 53 64.2
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 4.3e-10 68.6 77 45.5
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 5.6e-10 68.2 90 34.4
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 8.0e-09 64.3 50 54.0
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 3.1e-08 62.4 128 31.2
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 9.8e-07 57.4 52 51.9


User provided reference genes

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