Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 2.5e-75 286.6 332 100.0
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 5.2e-73 278.9 332 98.8
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 5.2e-73 278.9 332 98.8
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.4e-70 270.0 332 97.3
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.5e-69 266.2 332 96.7
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 5.5e-67 258.8 326 97.2
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 5.9e-61 238.8 318 95.6
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.8e-61 238.4 318 95.3
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.9e-60 236.5 321 95.3
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 2.9e-60 236.5 322 94.7
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 5.0e-60 235.7 321 92.2
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 6.6e-60 235.3 323 93.8
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.1e-59 234.6 324 93.8
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 2.5e-59 233.4 324 94.4
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 3.3e-59 233.0 322 93.8
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 3.3e-59 233.0 322 94.1
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.3e-59 231.9 326 92.6
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 9.5e-59 231.5 330 91.8
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.5e-59 231.5 324 91.0
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.2e-58 231.1 326 92.3
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.2e-58 231.1 323 94.1
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.6e-58 230.7 318 94.0
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 2.1e-58 230.3 325 93.5
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 2.8e-58 229.9 322 93.5
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 2.8e-58 229.9 322 93.5
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 2.8e-58 229.9 322 92.5
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.6e-58 229.6 326 92.3
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 3.6e-58 229.6 324 93.2
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 4.7e-58 229.2 332 91.9
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 4.7e-58 229.2 322 93.5
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 6.1e-58 228.8 322 93.2
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 6.1e-58 228.8 318 94.3
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 8.0e-58 228.4 325 90.5
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.0e-58 228.4 324 92.3
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.0e-57 228.0 325 91.7
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.0e-57 228.0 320 93.8
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.4e-57 227.6 321 93.1
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.8e-57 227.3 332 91.3
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.3e-57 226.9 320 94.1
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 4.0e-57 226.1 332 91.3
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 4.0e-57 226.1 348 64.7
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 5.2e-57 225.7 320 93.4
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 5.2e-57 225.7 323 88.9
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 5.2e-57 225.7 318 95.0
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 6.8e-57 225.3 320 94.4
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 8.9e-57 224.9 326 91.7
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.2e-56 224.6 322 92.9
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.5e-56 224.2 321 93.8
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.5e-56 224.2 321 93.8
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.5e-56 224.2 332 91.3
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.0e-56 223.8 332 91.9
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.0e-56 223.8 326 91.7
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.6e-56 223.4 322 93.5
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 3.4e-56 223.0 322 92.5
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 5.8e-56 222.2 326 91.7
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 5.8e-56 222.2 321 91.6
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 7.5e-56 221.9 325 91.1
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.5e-56 221.9 324 89.2
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.5e-56 221.9 332 91.9
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.3e-55 221.1 322 92.5
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.3e-55 221.1 327 89.9
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.7e-55 220.7 323 91.3
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.7e-55 220.7 338 80.2
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.2e-55 220.3 322 92.5
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.2e-55 220.3 331 90.6
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.2e-55 220.3 332 88.0
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 2.9e-55 219.9 334 90.7
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.7e-55 219.5 330 90.3
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 3.7e-55 219.5 322 92.2
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.4e-55 218.8 332 89.8
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 6.4e-55 218.8 333 90.4
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.1e-54 218.0 321 93.1
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.9e-54 217.2 321 90.7
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.9e-54 217.2 321 93.1
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.9e-54 217.2 325 88.3
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.4e-54 216.9 324 92.3
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.4e-54 216.9 325 90.8
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.2e-54 216.5 321 91.0
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 4.1e-54 216.1 321 91.9
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 4.1e-54 216.1 321 91.9
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 5.4e-54 215.7 323 88.9
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 9.2e-54 214.9 323 91.3
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 9.2e-54 214.9 321 91.9
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 9.2e-54 214.9 321 91.9
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 9.2e-54 214.9 323 89.5
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 9.2e-54 214.9 333 90.1
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.2e-53 214.5 366 69.4
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.6e-53 214.2 321 92.8
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 2.7e-53 213.4 321 92.8
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 3.5e-53 213.0 328 87.5
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 6.0e-53 212.2 297 96.3
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 6.0e-53 212.2 323 90.1
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 2.3e-52 210.3 325 90.8
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 3.9e-52 209.5 321 91.3
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 8.6e-52 208.4 325 76.3
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.1e-51 208.0 331 80.1
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.5e-51 207.6 321 90.7
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.5e-51 207.6 324 90.4
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 7.3e-51 205.3 321 90.3
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 7.3e-51 205.3 352 66.2
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 9.5e-51 204.9 320 89.1
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.2e-50 204.5 321 90.3
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.2e-50 204.5 337 75.1
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.6e-50 204.1 330 78.5
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.6e-50 203.0 319 89.7
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 3.6e-50 203.0 322 90.1
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 3.6e-50 203.0 296 93.6
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 4.7e-50 202.6 253 89.3
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.3e-49 200.3 246 87.8
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 2.3e-49 200.3 324 89.8
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.2e-48 198.0 346 85.3
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.6e-48 196.8 305 91.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 2.6e-48 196.8 244 89.8
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 3.4e-48 196.4 340 72.9
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.5e-48 195.3 324 81.5
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.5e-48 195.3 324 81.5
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.3e-47 194.5 324 86.4
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.2e-47 193.7 346 77.2
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 8.3e-47 191.8 323 85.4
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 1.4e-46 191.0 326 86.2
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.4e-46 191.0 336 77.1
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 3.2e-46 189.9 322 88.5
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 3.2e-46 189.9 322 88.5
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.1e-45 187.2 325 84.9
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.1e-45 187.2 325 84.9
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 3.5e-45 186.4 322 87.9
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.3e-44 183.7 322 88.5
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 5.0e-44 182.6 241 71.4
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.6e-44 182.2 327 70.3
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 8.6e-44 181.8 326 73.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.5e-43 180.3 237 90.3
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 3.3e-43 179.9 96 91.7
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 5.6e-43 179.1 319 86.2
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.2e-42 177.9 98 85.7
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 2.8e-42 176.8 339 82.0
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.8e-42 176.8 107 79.4
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.8e-42 176.8 107 79.4
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 8.1e-42 175.3 308 88.6
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.3e-41 173.7 322 83.2
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.1e-41 173.3 222 94.1
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 4.0e-41 172.9 320 86.2
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 5.2e-41 172.6 321 83.5
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.2e-41 172.6 105 81.0
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 5.2e-41 172.6 326 82.2
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 8.9e-41 171.8 326 84.4
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.2e-40 171.4 97 85.6
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.0e-40 170.6 105 79.0
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.3e-39 167.9 306 54.6
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 7.1e-38 162.2 96 82.3
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 7.1e-38 162.2 96 82.3
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 7.1e-38 162.2 100 78.0
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 6.0e-37 159.1 329 82.1
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 7.8e-37 158.7 81 88.9
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.7e-36 157.5 101 76.2
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 5.6e-35 152.5 244 80.3
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.4e-30 137.1 73 86.3
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 4.2e-30 136.3 331 76.1
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 2.7e-29 133.7 304 80.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.0e-28 131.7 95 64.2
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.3e-27 126.7 276 81.9
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.2e-26 124.8 80 75.0
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.9e-20 103.2 85 64.7
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.1e-20 102.8 65 76.9
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 6.2e-18 95.9 50 84.0
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 8.1e-18 95.5 118 91.5
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 2.4e-17 94.0 118 57.6
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.4e-17 94.0 64 64.1
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 3.1e-17 93.6 245 72.2
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.0e-17 92.0 258 87.6
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 4.5e-16 89.7 64 62.5
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 4.2e-14 83.2 64 62.5
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 2.1e-13 80.9 48 83.3
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 3.5e-13 80.1 50 76.0
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 2.3e-12 77.4 41 90.2
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.5e-11 73.9 41 90.2
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 2.1e-10 70.9 41 87.8
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 4.8e-10 69.7 95 48.4
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 4.0e-09 66.6 95 46.3
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.5e-08 63.2 40 75.0
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 7.6e-08 62.4 44 75.0


User provided reference genes

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