Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.5e-98 362.8 185 100.0
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 9.2e-96 353.6 185 97.3
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 5.6e-93 344.4 185 95.1
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 6.2e-76 287.7 194 79.9
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 8.1e-76 287.3 194 79.4
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.2e-73 279.3 194 77.8
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.6e-66 255.8 195 71.3
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.5e-66 255.0 194 70.6
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 9.6e-61 237.3 193 65.3
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.3e-60 236.9 193 65.8
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 2.4e-59 232.6 123 92.7
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 2.7e-55 219.2 145 76.6
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 2.7e-55 219.2 137 78.1
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 1.8e-54 216.5 142 73.9
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 2.3e-54 216.1 140 75.7
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 6.7e-54 214.5 185 63.2
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.9e-53 213.0 184 61.4
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 4.3e-53 211.8 182 61.5
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 4.3e-53 211.8 177 63.8
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 9.6e-53 210.7 189 60.8
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 1.3e-52 210.3 189 59.8
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 2.1e-52 209.5 177 65.5
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 2.1e-52 209.5 184 62.5
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 2.8e-52 209.1 179 64.2
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.7e-52 208.8 184 60.3
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 3.7e-52 208.8 191 59.2
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 4.8e-52 208.4 147 71.4
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 6.3e-52 208.0 160 65.6
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 6.3e-52 208.0 146 71.9
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 3.1e-51 205.7 182 64.3
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 4.1e-51 205.3 184 59.2
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 4.1e-51 205.3 179 61.5
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 4.1e-51 205.3 184 62.5
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 5.3e-51 204.9 129 76.7
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 9.0e-51 204.1 182 63.7
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 1.5e-50 203.4 191 60.7
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 2.0e-50 203.0 138 72.5
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.6e-50 202.6 182 63.2
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 7.6e-50 201.1 184 60.9
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 1.0e-49 200.7 161 64.6
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 1.7e-49 199.9 134 73.9
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 2.9e-49 199.1 189 56.1
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 3.8e-49 198.7 189 55.0
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 3.8e-49 198.7 133 73.7
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 3.8e-49 198.7 122 81.1
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 1.4e-48 196.8 152 65.1
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 2.5e-48 196.1 146 70.5
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 5.5e-48 194.9 135 74.1
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 7.2e-48 194.5 139 69.8
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 2.7e-47 192.6 104 83.7
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 3.6e-47 192.2 103 84.5
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 3.6e-47 192.2 104 83.7
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 4.6e-47 191.8 135 71.1
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 1.0e-46 190.7 104 82.7
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 3.0e-46 189.1 128 71.1
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 3.9e-46 188.7 149 63.8
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 5.1e-46 188.3 151 64.2
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 5.1e-46 188.3 151 64.2
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 6.7e-46 188.0 128 71.1
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 6.7e-46 188.0 104 81.7
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 6.7e-46 188.0 104 81.7
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 6.7e-46 188.0 128 71.1
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 6.7e-46 188.0 164 59.8
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 8.7e-46 187.6 128 70.3
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 8.7e-46 187.6 128 70.3
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 8.7e-46 187.6 128 70.3
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 1.5e-45 186.8 128 71.1
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 1.9e-45 186.4 183 55.2
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.9e-45 186.4 184 53.3
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 4.3e-45 185.3 132 70.5
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 4.3e-45 185.3 177 54.8
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 7.4e-45 184.5 147 63.3
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 1.6e-44 183.3 158 60.1
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 2.2e-44 183.0 135 68.1
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 2.2e-44 183.0 125 70.4
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 2.2e-44 183.0 180 53.9
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 2.8e-44 182.6 191 51.3
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 1.8e-43 179.9 137 66.4
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.8e-43 179.9 186 52.2
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 9.1e-43 177.6 186 54.3
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 2.0e-42 176.4 134 64.9
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 2.0e-42 176.4 101 78.2
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 3.4e-42 175.6 139 65.5
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 3.2e-40 169.1 111 72.1
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 9.4e-40 167.5 152 59.2
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 3.6e-39 165.6 142 64.8
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 1.0e-38 164.1 104 76.0
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 2.3e-38 162.9 101 71.3
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 3.9e-38 162.2 97 74.2
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 3.3e-37 159.1 122 64.8
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 7.4e-37 157.9 132 62.9
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 1.3e-36 157.1 116 72.4
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 1.1e-35 154.1 152 53.3
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 3.4e-34 149.1 137 60.6
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.7e-33 146.7 77 89.6
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 8.5e-33 144.4 182 48.4
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 4.2e-32 142.1 77 81.8
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 7.9e-31 137.9 123 58.5
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 5.7e-29 131.7 103 57.3
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 5.7e-29 131.7 142 52.1
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 8.2e-28 127.9 129 48.8
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 5.3e-27 125.2 151 48.3
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 3.8e-25 119.0 130 44.6
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 1.1e-24 117.5 119 54.6
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 4.2e-24 115.5 93 55.9
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.0e-23 111.3 86 69.8
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.0e-23 111.3 86 69.8
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.0e-23 111.3 86 69.8
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.0e-23 111.3 86 69.8
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 1.8e-22 110.2 73 69.9
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 6.7e-22 108.2 84 69.0
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 8.8e-22 107.8 55 90.9
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 2.8e-20 102.8 51 92.2
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 2.8e-20 102.8 141 48.9
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 3.1e-19 99.4 49 85.7
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 9.1e-19 97.8 91 52.7
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 2.7e-18 96.3 80 62.5
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.3e-17 94.0 52 82.7
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 2.3e-14 83.2 134 38.1
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-13 78.2 49 65.3
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 3.1e-11 72.8 66 59.1
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 5.4e-11 72.0 109 49.5
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 4.5e-10 68.9 93 49.5
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 1.0e-09 67.8 41 73.2
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 4.2e-08 62.4 63 54.0
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 2.8e-07 59.7 58 55.2
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 2.8e-07 59.7 58 55.2
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 8.0e-07 58.2 40 72.5
Nitab4.5_0001884g0030 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.4e-06 57.4 89 46.1
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 5.2e-06 55.5 93 40.9


User provided reference genes

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