Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 1.8e-212 742.3 366 100.0
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.7e-205 719.2 366 96.7
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 5.3e-204 714.1 366 96.2
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.1e-196 689.9 366 92.1
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.2e-193 678.3 366 90.7
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 4.4e-190 667.9 366 89.1
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 5.7e-190 667.5 366 89.3
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 4.0e-175 618.2 371 83.8
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 1.4e-159 566.6 370 74.6
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 7.0e-156 554.3 370 73.2
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 4.6e-155 551.6 359 74.9
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.3e-154 550.1 363 74.1
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 1.3e-154 550.1 373 72.4
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.3e-154 550.1 359 75.2
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 1.3e-154 550.1 371 72.2
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 2.3e-154 549.3 369 72.4
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 3.0e-154 548.9 370 72.7
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.5e-153 543.9 369 72.1
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.5e-153 543.9 369 72.1
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 2.8e-152 542.3 370 70.3
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 6.2e-152 541.2 358 73.7
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 6.2e-152 541.2 369 71.0
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 8.1e-152 540.8 370 70.0
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 1.4e-151 540.0 364 71.4
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 2.3e-151 539.3 371 72.2
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.2e-151 538.1 362 70.2
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 5.2e-151 538.1 366 70.8
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.2e-150 537.0 371 70.1
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.5e-150 536.6 372 69.1
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.0e-150 536.2 362 70.2
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 2.6e-150 535.8 371 71.7
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 4.4e-150 535.0 372 68.5
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 7.5e-150 534.3 370 70.8
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 7.5e-150 534.3 362 69.9
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 1.3e-149 533.5 371 69.0
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.7e-149 533.1 371 70.1
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 2.2e-149 532.7 371 70.6
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 2.2e-149 532.7 371 70.9
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 2.9e-149 532.3 366 71.0
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 3.7e-149 531.9 368 70.9
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 8.3e-149 530.8 372 69.4
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 8.3e-149 530.8 371 69.5
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.9e-148 529.6 371 69.3
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.4e-148 529.3 368 70.7
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 7.1e-148 527.7 371 69.3
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 1.2e-147 526.9 370 68.9
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.7e-147 525.8 371 69.0
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 3.5e-147 525.4 384 66.1
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 4.6e-147 525.0 371 69.3
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 7.8e-147 524.2 371 70.1
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.3e-146 523.5 368 68.2
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 2.3e-146 522.7 371 69.8
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 3.0e-146 522.3 371 67.7
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 3.0e-146 522.3 372 68.5
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 3.0e-146 522.3 367 70.6
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 3.9e-146 521.9 371 67.1
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 3.3e-145 518.8 370 68.1
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.3e-145 518.8 364 69.2
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 4.3e-145 518.5 369 66.9
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 4.3e-145 518.5 369 66.9
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 4.3e-145 518.5 371 70.4
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 5.6e-145 518.1 370 67.3
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 7.3e-145 517.7 370 68.1
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 7.3e-145 517.7 371 68.7
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.6e-144 516.5 372 66.9
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.6e-144 516.5 372 66.9
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 1.6e-144 516.5 391 66.5
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 1.6e-144 516.5 372 69.6
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.6e-144 516.5 364 69.5
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 2.8e-144 515.8 375 68.5
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 2.8e-144 515.8 371 67.4
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 2.8e-144 515.8 370 67.6
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 3.6e-144 515.4 362 68.5
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 3.6e-144 515.4 371 66.6
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 4.7e-144 515.0 363 68.0
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 4.7e-144 515.0 375 67.2
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 1.1e-143 513.8 371 66.0
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 1.1e-143 513.8 371 66.6
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 1.4e-143 513.5 364 67.3
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.8e-143 513.1 371 66.6
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 2.3e-143 512.7 371 67.4
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 3.1e-143 512.3 364 67.3
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 4.0e-143 511.9 403 64.5
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 8.9e-143 510.8 371 67.4
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 2.0e-142 509.6 371 66.6
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.9e-141 505.8 372 66.1
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 3.7e-141 505.4 367 67.0
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 6.4e-141 504.6 371 67.1
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 1.9e-140 503.1 364 66.8
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.6e-139 500.0 363 68.9
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 7.8e-139 497.7 371 65.8
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 5.1e-138 495.0 370 66.5
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 4.3e-137 491.9 364 65.7
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 1.1e-135 487.3 376 65.2
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 9.9e-134 480.7 433 57.0
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 1.1e-132 477.2 370 64.6
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 1.6e-131 473.4 371 63.9
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 4.6e-131 471.9 387 62.3
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 3.9e-130 468.8 345 67.0
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 3.3e-129 465.7 372 62.1
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 1.1e-127 460.7 382 60.2
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.1e-127 460.7 358 63.4
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 3.1e-127 459.1 384 59.6
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 6.9e-127 458.0 323 68.4
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 4.9e-125 451.8 368 61.4
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 4.9e-125 451.8 377 59.2
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 4.9e-125 451.8 377 59.2
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 7.4e-121 438.0 377 60.5
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 7.9e-115 417.9 291 69.8
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 8.1e-112 407.9 366 54.1
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 1.2e-110 404.1 356 54.5
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.6e-110 402.9 368 54.6
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 2.2e-109 399.8 369 54.5
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 2.5e-108 396.4 272 70.2
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 4.2e-108 395.6 352 60.5
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.7e-107 392.9 357 54.6
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 1.0e-106 391.0 272 69.1
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 1.5e-105 387.1 593 40.5
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 7.4e-105 384.8 262 70.6
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 1.3e-104 384.0 267 66.7
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.1e-103 380.9 370 55.7
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 5.0e-101 372.1 353 49.6
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 6.5e-101 371.7 256 68.8
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.0e-98 364.4 241 72.6
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 1.3e-98 364.0 250 67.2
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 8.2e-96 354.8 248 65.3
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 1.1e-95 354.4 247 65.2
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 9.0e-95 351.3 249 67.1
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 5.0e-93 345.5 237 72.2
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 8.5e-93 344.7 368 50.0
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 4.6e-91 339.0 238 69.3
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 3.1e-87 326.2 395 45.1
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 7.9e-83 311.6 236 66.9
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.8e-79 300.4 357 45.7
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.4e-79 300.1 191 72.8
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 2.8e-64 250.0 158 75.3
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 8.8e-58 228.4 270 50.0
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 5.7e-49 199.1 201 49.3
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.3e-48 198.0 202 53.0
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 4.1e-47 193.0 134 74.6
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 4.9e-40 169.5 115 66.1
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 4.3e-36 156.4 401 32.4
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.8e-35 153.7 106 67.0
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 1.4e-34 151.4 150 51.3
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 1.3e-32 144.8 119 62.2
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 4.6e-30 136.3 295 32.9
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.0e-29 135.2 174 46.6
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 5.6e-28 129.4 362 28.7
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 3.1e-26 123.6 100 57.0
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 9.2e-23 112.1 70 65.7
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.1e-20 105.1 93 58.1
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 2.8e-19 100.5 93 55.9
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 6.2e-19 99.4 385 26.5
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 3.1e-18 97.1 93 54.8
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 5.2e-18 96.3 76 60.5
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 9.0e-10 68.9 52 59.6
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 1.2e-09 68.6 54 57.4
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 9.9e-09 65.5 55 54.5
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 8.4e-08 62.4 59 54.2
MELO3C035473.2 Cucumis melo HOM05D040713 ORTHO05D005180 5.4e-07 59.7 43 69.8
CAN.G21.22 Capsicum annuum HOM05D003911 ORTHO05D115628 7.1e-07 59.3 73 43.8


User provided reference genes

Program Settings