Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 6.4e-146 520.8 270 100.0
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.0e-119 433.7 270 86.7
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 2.8e-117 425.6 270 85.2
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.2e-107 393.7 270 77.4
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 6.7e-103 377.9 276 76.1
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 5.7e-94 348.2 265 74.7
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 5.7e-78 295.0 270 61.1
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 8.2e-77 291.2 271 62.4
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 5.9e-75 285.0 270 61.1
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.9e-73 280.0 274 58.8
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 9.4e-73 277.7 273 60.1
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 6.1e-72 275.0 271 58.3
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.9e-71 272.3 271 60.5
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 8.8e-71 271.2 270 59.3
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.5e-70 270.4 271 59.0
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.0e-70 270.0 271 60.1
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 2.0e-70 270.0 271 60.5
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 4.4e-70 268.9 270 59.6
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 5.7e-70 268.5 275 57.8
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 8.2e-69 264.6 223 64.1
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.8e-68 263.5 270 57.4
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 9.1e-68 261.2 269 56.9
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 2.6e-67 259.6 270 58.5
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 2.6e-67 259.6 269 55.0
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.2e-66 256.5 272 57.4
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 3.8e-66 255.8 241 61.8
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 5.0e-66 255.4 270 58.1
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.5e-65 253.8 281 55.2
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 7.2e-65 251.5 284 53.2
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 7.2e-65 251.5 270 57.8
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 7.2e-65 251.5 270 57.8
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 7.2e-65 251.5 270 57.8
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 9.4e-65 251.1 269 57.6
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.6e-64 250.4 271 55.0
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.6e-64 250.4 219 63.9
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 2.1e-64 250.0 220 64.1
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 3.6e-64 249.2 271 55.7
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.1e-64 248.4 271 54.2
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.0e-63 247.7 284 54.2
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.0e-63 246.1 273 55.7
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 4.0e-63 245.7 274 54.0
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 6.7e-63 245.0 272 56.2
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 8.8e-63 244.6 222 61.7
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 8.8e-63 244.6 275 53.1
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.1e-62 244.2 270 55.9
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.1e-62 244.2 270 55.6
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 2.0e-62 243.4 270 55.9
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 3.3e-62 242.7 220 62.7
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 4.4e-62 242.3 271 53.1
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 7.4e-62 241.5 270 54.8
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 7.4e-62 241.5 272 55.5
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 9.7e-62 241.1 276 52.9
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 2.2e-61 240.0 270 53.3
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 2.2e-61 240.0 266 55.3
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 6.3e-61 238.4 272 54.8
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 1.8e-60 236.9 221 63.3
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.8e-60 236.9 270 54.8
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 2.4e-60 236.5 270 51.9
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 2.4e-60 236.5 270 51.9
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 3.1e-60 236.1 274 53.6
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 3.1e-60 236.1 275 52.0
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 5.3e-60 235.3 270 51.9
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 5.3e-60 235.3 262 53.8
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 9.1e-60 234.6 218 61.9
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.2e-59 234.2 270 51.9
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.2e-59 234.2 220 60.0
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.2e-59 234.2 269 50.9
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.2e-59 234.2 271 52.8
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.2e-59 234.2 343 46.4
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.6e-59 233.8 270 53.0
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.6e-59 233.8 270 51.9
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 2.0e-59 233.4 266 54.1
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 3.5e-59 232.6 270 51.5
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 3.5e-59 232.6 266 54.1
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 4.5e-59 232.3 266 53.8
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 4.5e-59 232.3 237 57.0
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 5.9e-59 231.9 266 52.6
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 5.9e-59 231.9 276 52.9
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 7.7e-59 231.5 225 60.0
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.3e-58 230.7 227 59.5
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 1.3e-58 230.7 238 57.6
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 1.7e-58 230.3 254 55.1
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 5.0e-58 228.8 270 49.6
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 6.5e-58 228.4 293 49.8
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 6.5e-58 228.4 255 55.3
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 2.5e-57 226.5 280 53.6
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 5.5e-57 225.3 268 51.5
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 7.2e-57 224.9 276 51.4
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.2e-56 224.2 267 53.2
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.2e-56 224.2 199 63.3
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.8e-55 220.3 278 51.4
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 2.3e-55 219.9 228 57.5
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 3.0e-55 219.5 270 48.9
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 6.8e-55 218.4 273 49.8
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 8.8e-55 218.0 270 49.3
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.5e-54 217.2 235 53.2
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.8e-53 213.0 269 52.0
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.8e-53 213.0 269 52.0
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 8.3e-53 211.5 139 77.0
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 2.7e-51 206.5 233 50.6
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.0e-50 204.5 241 53.1
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.0e-50 204.5 200 59.5
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 1.5e-49 200.7 184 62.0
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.5e-49 200.7 199 58.3
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 2.5e-49 199.9 242 52.1
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 6.1e-48 195.3 273 48.0
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 5.7e-46 188.7 288 46.5
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.8e-40 169.9 214 47.2
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.7e-40 169.1 271 42.4
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 2.0e-38 163.7 332 39.2
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.0e-38 163.7 160 62.5
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 7.5e-38 161.8 108 77.8
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 2.9e-37 159.8 127 64.6
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 5.4e-36 155.6 179 50.3
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.0e-34 151.4 104 71.2
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.1e-33 147.9 104 69.2
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.3e-33 146.4 104 69.2
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 4.3e-33 146.0 151 53.6
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.1e-31 139.8 97 70.1
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.6e-30 136.7 248 39.1
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.0e-27 127.1 191 41.9
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 7.8e-27 125.2 253 36.0
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.0e-26 124.8 246 35.8
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.0e-26 124.8 253 36.0
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 5.6e-25 119.0 236 34.7
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.2e-24 117.9 152 45.4
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 6.2e-24 115.5 163 43.6
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 8.1e-24 115.2 167 43.1
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 4.0e-23 112.8 93 59.1
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 3.4e-22 109.8 76 67.1
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 4.9e-21 105.9 99 60.6
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 1.9e-17 94.0 128 48.4
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.8e-15 87.4 191 34.6
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.1e-15 86.7 113 46.0
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 8.9e-15 85.1 87 48.3
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 2.1e-11 73.9 146 35.6
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 3.0e-10 70.1 164 32.9
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 8.6e-10 68.6 168 32.1
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.3e-09 66.2 100 43.0
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 4.3e-09 66.2 51 68.6
Migut.H01199 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.6e-08 64.3 107 43.0
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 2.6e-06 57.0 54 61.1


User provided reference genes

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