Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 1.0e-66 256.5 121 100.0
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 2.5e-65 251.9 121 97.5
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 2.5e-65 251.9 121 97.5
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 1.5e-62 242.7 121 94.2
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 3.7e-61 238.0 121 91.7
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 6.3e-61 237.3 121 90.9
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 7.0e-60 233.8 121 88.4
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 8.5e-58 226.9 121 88.4
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 2.1e-56 222.2 119 83.2
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 4.7e-56 221.1 119 84.9
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 6.1e-56 220.7 119 83.2
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 6.1e-56 220.7 119 84.0
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 1.0e-55 219.9 119 84.0
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 1.0e-55 219.9 119 84.9
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 1.4e-55 219.5 118 85.6
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 1.4e-55 219.5 119 82.4
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 2.3e-55 218.8 119 84.0
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 3.0e-55 218.4 119 84.0
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 4.0e-55 218.0 120 85.0
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 6.7e-55 217.2 119 81.5
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 6.7e-55 217.2 119 81.5
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 2.0e-54 215.7 119 81.5
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 2.0e-54 215.7 119 81.5
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 2.0e-54 215.7 119 84.0
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 3.3e-54 214.9 119 84.0
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 3.3e-54 214.9 119 82.4
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 5.7e-54 214.2 119 79.8
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 9.7e-54 213.4 119 81.5
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 1.3e-53 213.0 119 80.7
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 2.8e-53 211.8 119 81.5
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 2.8e-53 211.8 119 80.7
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 3.7e-53 211.5 119 82.4
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 8.2e-53 210.3 119 80.7
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 1.1e-52 209.9 119 81.5
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 1.4e-52 209.5 117 82.9
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 2.4e-52 208.8 119 79.8
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 2.4e-52 208.8 119 80.7
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 4.1e-52 208.0 117 82.1
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 5.3e-52 207.6 126 80.2
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 9.1e-52 206.8 119 78.2
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 1.2e-51 206.5 119 79.0
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 2.7e-51 205.3 121 82.6
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 2.7e-51 205.3 121 82.6
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 2.7e-51 205.3 121 82.6
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 4.5e-51 204.5 120 83.3
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 5.9e-51 204.1 117 79.5
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 5.9e-51 204.1 119 77.3
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 5.9e-51 204.1 119 77.3
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 7.7e-51 203.8 121 81.8
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.3e-50 203.0 121 81.8
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 2.2e-50 202.2 119 77.3
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 2.9e-50 201.8 122 79.5
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 2.5e-49 198.7 119 76.5
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 2.5e-49 198.7 122 78.7
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 3.2e-49 198.4 119 75.6
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 5.5e-49 197.6 119 76.5
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 2.1e-48 195.7 119 76.5
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 2.7e-48 195.3 116 76.7
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 4.7e-48 194.5 117 76.1
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 3.0e-47 191.8 120 75.8
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 5.2e-47 191.0 131 70.2
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 8.8e-47 190.3 115 75.7
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 1.5e-46 189.5 116 75.0
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 2.0e-46 189.1 124 70.2
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 3.4e-46 188.3 116 74.1
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 3.4e-46 188.3 116 74.1
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 3.4e-46 188.3 116 74.1
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 3.4e-46 188.3 116 74.1
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 3.4e-46 188.3 120 74.2
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 7.5e-46 187.2 116 74.1
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 7.5e-46 187.2 116 73.3
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 7.5e-46 187.2 116 73.3
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 9.8e-46 186.8 124 70.2
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 1.3e-45 186.4 117 71.8
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 1.7e-45 186.0 116 73.3
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 1.7e-45 186.0 116 73.3
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 3.7e-45 184.9 116 72.4
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 3.7e-45 184.9 116 72.4
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 3.7e-45 184.9 116 72.4
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 3.7e-45 184.9 116 72.4
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 3.7e-45 184.9 116 73.3
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 1.1e-44 183.3 116 73.3
Nitab4.5_0029554g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 8.5e-42 173.7 91 86.8
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 2.5e-41 172.2 130 67.7
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 3.2e-41 171.8 87 86.2
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 7.2e-41 170.6 90 85.6
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 2.8e-40 168.7 90 84.4
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 3.6e-40 168.3 90 83.3
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 6.1e-40 167.5 90 80.0
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 3.0e-39 165.2 91 83.5
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 6.8e-39 164.1 117 66.7
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 8.8e-39 163.7 87 82.8
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 1.5e-38 162.9 87 82.8
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 1.5e-38 162.9 119 63.0
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 3.4e-38 161.8 99 73.7
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 8.3e-37 157.1 87 83.9
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 8.3e-37 157.1 115 62.6
arahy.Tifrunner.gnm1.ann1.9GBJ25 Arachis hypogaea HOM05D006449 ORTHO05D007995 4.1e-36 154.8 86 82.6
arahy.Tifrunner.gnm1.ann1.D9FX9P Arachis hypogaea HOM05D006449 ORTHO05D007995 4.1e-36 154.8 86 82.6
Sc20g0005520 Simmondsia chinensis HOM05D006449 ORTHO05D007995 1.6e-35 152.9 86 77.9
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 3.5e-35 151.8 76 86.8
Migut.J00654 Erythranthe guttata HOM05D006449 ORTHO05D007995 4.5e-35 151.4 86 79.1
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 5.9e-35 151.0 86 79.1
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 2.3e-34 149.1 87 73.6
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 3.8e-34 148.3 86 77.9
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 5.0e-34 147.9 115 61.7
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 5.0e-34 147.9 115 61.7
Oeu005023.1 Olea europaea HOM05D006449 ORTHO05D007995 4.3e-33 144.8 101 70.3
Haze_20546 Corylus avellana HOM05D006449 ORTHO05D007995 9.5e-33 143.7 100 68.0
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 1.2e-32 143.3 73 87.7
vmacro07293 Vaccinium macrocarpon HOM05D006449 ORTHO05D007995 2.8e-32 142.1 103 66.0
Ciclev10013228m.g Citrus clementina HOM05D006449 ORTHO05D007995 1.4e-31 139.8 84 73.8
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 4.0e-31 138.3 89 73.0
Manes.08G011000 Manihot esculenta HOM05D006449 ORTHO05D007995 3.2e-28 128.6 97 64.9
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 3.3e-25 118.6 67 73.1
Prupe.7G129700 Prunus persica HOM05D006449 ORTHO05D007995 1.4e-23 113.2 65 76.9
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 1.3e-18 96.7 54 79.6
Lj3A986G82 Lonicera japonica HOM05D006449 ORTHO05D007995 1.9e-17 92.8 119 46.2
CBR_g8310 Chara braunii HOM05D006449 ORTHO05D007995 1.2e-14 83.6 115 40.0
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 1.5e-14 83.2 110 40.0
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 3.4e-14 82.0 117 37.6
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 1.3e-13 80.1 146 34.9
MSTRG.19181 Avicennia marina HOM05D006449 ORTHO05D007995 3.3e-09 65.5 33 90.9
HanXRQChr16g0526221 Helianthus annuus HOM05D006449 ORTHO05D007995 1.2e-08 63.5 30 83.3
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.1e-08 62.8 31 90.3


User provided reference genes

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