Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 7.6e-155 550.4 273 100.0
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 7.1e-153 543.9 273 98.9
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 7.1e-153 543.9 273 98.9
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 9.3e-153 543.5 273 98.5
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 5.6e-150 534.3 273 96.0
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 5.6e-134 481.1 272 84.2
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 2.8e-133 478.8 272 84.2
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 2.8e-133 478.8 272 82.4
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 4.8e-133 478.0 270 84.4
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 8.2e-133 477.2 270 83.7
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 3.1e-132 475.3 270 83.7
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 6.9e-132 474.2 272 83.5
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.2e-131 473.4 271 84.5
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 1.2e-131 473.4 271 84.5
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 1.2e-131 473.4 270 82.2
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 2.0e-131 472.6 272 83.8
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.6e-131 472.2 270 83.0
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 3.4e-131 471.9 270 83.0
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 4.5e-131 471.5 272 84.2
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.5e-131 471.5 270 83.0
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 5.8e-131 471.1 270 82.6
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 7.6e-131 470.7 271 83.8
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 7.6e-131 470.7 272 82.4
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 7.6e-131 470.7 272 82.4
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 1.0e-130 470.3 272 82.7
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 1.3e-130 469.9 271 84.5
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 1.7e-130 469.5 271 83.8
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.7e-130 469.5 272 83.1
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 2.2e-130 469.2 271 84.1
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 2.2e-130 469.2 272 82.7
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.2e-130 469.2 271 84.5
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 2.2e-130 469.2 270 82.2
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 2.9e-130 468.8 271 83.0
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 2.9e-130 468.8 272 82.7
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 2.9e-130 468.8 272 81.2
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 3.8e-130 468.4 269 82.5
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.9e-130 468.0 270 82.6
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 4.9e-130 468.0 272 81.6
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 8.4e-130 467.2 272 83.8
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 8.4e-130 467.2 271 83.4
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 8.4e-130 467.2 271 83.4
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 8.4e-130 467.2 272 82.4
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.1e-129 466.8 272 81.2
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.4e-129 466.5 272 81.6
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.4e-129 466.5 271 83.0
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.9e-129 466.1 270 80.4
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 3.2e-129 465.3 272 81.2
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 4.2e-129 464.9 270 80.0
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 4.2e-129 464.9 270 82.2
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 4.2e-129 464.9 270 82.2
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 5.5e-129 464.5 270 81.9
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 9.3e-129 463.8 270 80.7
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 9.3e-129 463.8 270 80.7
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 1.2e-128 463.4 271 83.0
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 1.2e-128 463.4 270 80.7
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 2.7e-128 462.2 270 79.3
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 3.5e-128 461.8 272 81.2
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 4.6e-128 461.5 271 83.0
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 4.6e-128 461.5 270 80.7
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 4.6e-128 461.5 270 81.5
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 6.0e-128 461.1 270 78.5
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 7.9e-128 460.7 270 80.4
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 1.0e-127 460.3 270 80.4
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 2.3e-127 459.1 270 80.7
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 2.3e-127 459.1 262 82.8
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 3.0e-127 458.8 272 80.5
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 3.0e-127 458.8 270 81.5
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 5.1e-127 458.0 270 81.1
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.1e-126 456.8 272 81.6
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.1e-126 456.8 272 81.6
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.5e-126 456.4 270 80.4
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 1.9e-126 456.1 270 80.0
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 2.5e-126 455.7 270 80.4
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 7.4e-126 454.1 270 78.5
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 9.7e-126 453.8 272 77.9
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.2e-125 452.6 270 81.1
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 8.2e-125 450.7 270 77.8
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.1e-124 450.3 270 79.6
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 1.1e-124 450.3 273 82.8
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.4e-124 449.9 272 78.3
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.6e-123 445.7 270 78.1
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 4.5e-123 444.9 257 82.5
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.3e-122 443.4 302 72.5
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.2e-122 442.6 272 77.2
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 5.0e-122 441.4 270 77.0
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 5.0e-122 441.4 270 76.7
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 1.4e-121 439.9 270 77.0
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 1.6e-120 436.4 304 72.0
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.0e-119 432.2 272 75.4
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 3.9e-119 431.8 270 76.3
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 3.3e-118 428.7 263 76.4
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 3.7e-117 425.2 270 73.7
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.1e-116 423.7 300 68.7
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 6.9e-116 421.0 270 75.6
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 9.1e-116 420.6 270 70.4
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 3.4e-115 418.7 270 75.6
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 3.4e-115 418.7 270 70.4
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.3e-114 416.8 282 71.3
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 3.8e-114 415.2 381 57.7
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 8.5e-114 414.1 270 69.6
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 2.5e-113 412.5 270 70.7
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 2.0e-110 402.9 240 78.3
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.7e-109 399.8 243 78.6
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 2.4e-108 396.0 240 79.6
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 5.0e-106 388.3 222 83.8
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.9e-105 386.3 222 82.9
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 3.2e-105 385.6 271 65.7
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.6e-104 383.3 270 67.8
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.1e-102 377.1 270 70.4
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.3e-100 368.2 251 74.1
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 8.0e-96 354.4 270 61.9
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 3.0e-95 352.4 220 77.7
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 1.5e-94 350.1 197 83.8
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 1.3e-93 347.1 270 60.4
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 2.0e-91 339.7 290 57.9
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 2.7e-91 339.3 271 63.8
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 4.5e-91 338.6 271 64.6
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 1.7e-90 336.7 271 64.2
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 5.7e-86 321.6 180 81.1
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 4.1e-84 315.5 271 61.3
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 1.5e-78 297.0 240 64.2
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-77 293.9 271 57.6
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 1.3e-77 293.9 276 51.4
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.3e-74 283.1 168 81.5
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.7e-69 266.9 152 80.9
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 3.7e-69 265.8 152 84.9
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 1.1e-65 254.2 165 75.2
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 6.8e-63 245.0 208 60.1
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.8e-55 220.3 153 71.9
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.2e-54 217.6 271 48.3
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.3e-50 203.4 272 47.1
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 4.7e-48 195.7 270 44.4
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.2e-43 181.0 140 65.7
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 4.4e-38 162.5 148 60.8
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 2.7e-35 153.3 89 79.8
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.7e-34 150.6 261 42.1
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 4.3e-33 146.0 269 39.4
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 6.2e-32 142.1 185 46.5
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 2.2e-29 133.7 130 56.2
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 2.9e-29 133.3 92 71.7
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 3.2e-28 129.8 135 51.1
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 3.2e-28 129.8 79 73.4
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 2.7e-27 126.7 135 50.4
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 1.4e-23 114.4 119 52.9
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.2e-19 101.3 73 65.8
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 2.9e-13 80.1 89 50.6
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 3.2e-12 76.6 45 75.6
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 3.9e-10 69.7 49 67.3
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 1.1e-07 61.6 49 67.3


User provided reference genes

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