Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003742 Solanum tuberosum HOM05D000093 ORTHO05D005356 6.6e-34 146.7 71 100.0
Sopen04g034240 Solanum pennellii HOM05D000093 ORTHO05D005356 1.9e-33 145.2 71 97.2
Solyc04g080650.4 Solanum lycopersicum HOM05D000093 ORTHO05D005356 1.6e-32 142.1 71 94.4
CAN.G1226.49 Capsicum annuum HOM05D000093 ORTHO05D005356 1.7e-29 132.1 71 88.7
Nitab4.5_0009228g0060 Nicotiana tabacum HOM05D000093 ORTHO05D005356 2.4e-28 128.3 71 85.9
Rhsim06G0030000 Rhododendron simsii HOM05D000093 ORTHO05D005356 1.7e-21 105.5 64 70.3
vmacro21669 Vaccinium macrocarpon HOM05D000093 ORTHO05D005356 1.1e-20 102.8 64 71.9
Potri.002G033000 Populus trichocarpa HOM05D000093 ORTHO05D005356 1.4e-20 102.4 67 64.2
Actinidia15353 Actinidia chinensis HOM05D000093 ORTHO05D005356 1.9e-20 102.1 60 71.7
CSS0002199 Camellia sinensis var. sinensis HOM05D000093 ORTHO05D005356 2.4e-20 101.7 58 75.9
Manes.18G021506 Manihot esculenta HOM05D000093 ORTHO05D005356 3.2e-20 101.3 58 74.1
MD08G1027400 Malus domestica HOM05D000093 ORTHO05D005356 5.4e-20 100.5 60 71.7
Sabra02G0026700 Salix brachista HOM05D000093 ORTHO05D005356 9.2e-20 99.8 63 68.3
QL02p009249 Quercus lobata HOM05D000093 ORTHO05D005356 2.1e-19 98.6 61 67.2
RcHm_v2.0_Chr6g0301491 Rosa chinensis HOM05D000093 ORTHO05D005356 2.1e-19 98.6 61 67.2
FvH4_2g39460 Fragaria vesca HOM05D000093 ORTHO05D005356 2.7e-19 98.2 61 67.2
FAN27G0631 Fragaria x ananassa HOM05D000149 ORTHO05D005356 2.7e-19 98.2 61 67.2
arahy.Tifrunner.gnm1.ann1.0NG64P Arachis hypogaea HOM05D000093 ORTHO05D005356 3.5e-19 97.8 60 66.7
arahy.Tifrunner.gnm1.ann1.E2W35F Arachis hypogaea HOM05D000093 ORTHO05D005356 3.5e-19 97.8 60 66.7
Prupe.1G375900 Prunus persica HOM05D000093 ORTHO05D005356 4.6e-19 97.4 60 68.3
Hund27134 Selenicereus undatus HOM05D000093 ORTHO05D005356 4.6e-19 97.4 57 71.9
CANSAT25G1310 Cannabis sativa HOM05D000093 ORTHO05D005356 6.0e-19 97.1 58 70.7
Thecc.08G031400 Theobroma cacao HOM05D000093 ORTHO05D005356 6.0e-19 97.1 58 69.0
Thecc.08G031600 Theobroma cacao HOM05D000093 ORTHO05D005356 6.0e-19 97.1 58 69.0
CiPaw.08G059700 Carya illinoinensis HOM05D000093 ORTHO05D005356 1.0e-18 96.3 61 67.2
Ciclev10027097m.g Citrus clementina HOM05D000093 ORTHO05D005356 1.0e-18 96.3 57 68.4
AUR62038043 Chenopodium quinoa HOM05D000093 ORTHO05D005356 1.3e-18 95.9 60 66.7
Lj4C36T5 Lonicera japonica HOM05D000093 ORTHO05D005356 1.7e-18 95.5 69 59.4
MELO3C010961.2 Cucumis melo HOM05D000093 ORTHO05D005356 3.9e-18 94.4 59 67.8
Duzib093G0062 Durio zibethinus HOM05D000093 ORTHO05D005356 3.9e-18 94.4 58 65.5
Eucgr.F01592 Eucalyptus grandis HOM05D000093 ORTHO05D005356 3.9e-18 94.4 60 63.3
Sed0011639 Sechium edule HOM05D000093 ORTHO05D005356 6.6e-18 93.6 59 69.5
CsaV3_2G028920 Cucumis sativus L. HOM05D000093 ORTHO05D005356 8.6e-18 93.2 59 66.1
GSVIVG01009750001 Vitis vinifera HOM05D000093 ORTHO05D005356 8.6e-18 93.2 60 65.0
Gohir.D06G004000 Gossypium hirsutum HOM05D000093 ORTHO05D005356 1.5e-17 92.4 58 65.5
TAR628G0173 Trochodendron aralioides HOM05D000093 ORTHO05D005356 4.3e-17 90.9 57 68.4
Gorai.010G008600 Gossypium raimondii HOM05D000093 ORTHO05D005356 7.3e-17 90.1 58 63.8
AT1G19630 Arabidopsis thaliana HOM05D000093 ORTHO05D005356 9.5e-17 89.7 56 71.4
Nn1g04911 Nelumbo nucifera HOM05D000093 ORTHO05D005356 9.5e-17 89.7 57 64.9
A08p29720 Brassica napus HOM05D000093 ORTHO05D005356 1.6e-16 89.0 56 67.9
C08p19550 Brassica napus HOM05D000093 ORTHO05D005356 1.6e-16 89.0 56 67.9
C08p19670 Brassica napus HOM05D000093 ORTHO05D005356 1.6e-16 89.0 56 67.9
BolC8t49578H Brassica oleracea HOM05D000093 ORTHO05D005356 1.6e-16 89.0 56 67.9
BolC8t49600H Brassica oleracea HOM05D000093 ORTHO05D005356 1.6e-16 89.0 56 67.9
BraA08t34908Z Brassica rapa HOM05D000093 ORTHO05D005356 1.6e-16 89.0 56 67.9
Thhalv10007476m.g Eutrema salsugineum HOM05D000093 ORTHO05D005356 1.6e-16 89.0 56 69.6
Lalb_Chr08g0245931 Lupinus albus HOM05D000093 ORTHO05D005356 1.6e-16 89.0 60 58.3
PGR083G0079 Punica granatum HOM05D000093 ORTHO05D005356 1.6e-16 89.0 60 60.0
Sp1g17470 Schrenkiella parvula HOM05D000093 ORTHO05D005356 1.6e-16 89.0 56 69.6
AL1G32350 Arabidopsis lyrata HOM05D000093 ORTHO05D005356 2.1e-16 88.6 56 69.6
PSO675G3059 Papaver somniferum HOM05D000093 ORTHO05D005356 2.1e-16 88.6 57 64.9
Aa31LG7G4240 Aethionema arabicum HOM05D000093 ORTHO05D005356 4.7e-16 87.4 56 67.9
MBI16_g30354_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D005356 6.2e-16 87.0 80 51.2
Lj1g0010132 Lotus japonicus HOM05D000093 ORTHO05D005356 5.2e-15 84.0 61 52.5
Aqoxy6G01166 Aquilegia oxysepala HOM05D000093 ORTHO05D005356 8.9e-15 83.2 54 64.8
Zm00001eb356300 Zea mays HOM05D000093 ORTHO05D005356 8.9e-15 83.2 57 56.1
Os05g0101600 Oryza sativa ssp. japonica HOM05D000093 ORTHO05D005356 3.4e-14 81.3 57 57.9
CSS0038051 Camellia sinensis var. sinensis HOM05D000093 ORTHO05D005356 4.4e-14 80.9 59 59.3
Ca_15495_v3 Cicer arietinum L. HOM05D000093 ORTHO05D005356 4.4e-14 80.9 63 54.0
Glyma.04G030100 Glycine max HOM05D000093 ORTHO05D005356 4.4e-14 80.9 63 54.0
MBI16_g08779_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D005356 5.8e-14 80.5 57 61.4
Psat5g016280 Pisum sativum HOM05D000093 ORTHO05D005356 5.8e-14 80.5 61 52.5
TPR.G12304 Trifolium pratense HOM05D000093 ORTHO05D005356 9.9e-14 79.7 61 54.1
Phvul.009G060000 Phaseolus vulgaris HOM05D000093 ORTHO05D005356 2.9e-13 78.2 60 55.0
Medtr3g112120 Medicago truncatula HOM05D000093 ORTHO05D005356 4.9e-13 77.4 61 54.1
VMungo1309G1437 Vigna mungo HOM05D000093 ORTHO05D005356 1.1e-12 76.3 63 50.8
SEGI_08170 Sequoiadendron giganteum HOM05D000093 ORTHO05D005356 7.1e-12 73.6 58 53.4
CAN.G358.43 Capsicum annuum HOM05D000093 ORTHO05D005356 9.2e-12 73.2 66 50.0
PGSC0003DMG400003608 Solanum tuberosum HOM05D000093 ORTHO05D005356 1.2e-11 72.8 60 50.0
Solyc02g084930.3 Solanum lycopersicum HOM05D000093 ORTHO05D005356 2.7e-11 71.6 60 50.0
Sopen02g029600 Solanum pennellii HOM05D000093 ORTHO05D005356 2.7e-11 71.6 60 50.0
Nitab4.5_0005626g0030 Nicotiana tabacum HOM05D000093 ORTHO05D005356 3.5e-11 71.2 60 50.0
Peaxi162Scf00418g00732 Petunia axillaris HOM05D000093 ORTHO05D005356 1.3e-10 69.3 60 48.3
Actinidia19205 Actinidia chinensis HOM05D000093 ORTHO05D005356 1.7e-10 68.9 61 47.5
Lj4C206T12 Lonicera japonica HOM05D000093 ORTHO05D005356 1.7e-10 68.9 66 43.9
Duzib147G1610 Durio zibethinus HOM05D000093 ORTHO05D005356 2.3e-10 68.6 52 55.8
RcHm_v2.0_Chr2g0128621 Rosa chinensis HOM05D000093 ORTHO05D005356 2.3e-10 68.6 56 51.8
PGR119G2285 Punica granatum HOM05D000093 ORTHO05D005356 3.0e-10 68.2 57 52.6
HanXRQChr15g0482311 Helianthus annuus HOM05D000093 ORTHO05D005356 3.9e-10 67.8 58 51.7
Lsat_1_v5_gn_3_77380 Lactuca sativa HOM05D000093 ORTHO05D005356 3.9e-10 67.8 60 50.0
Manes.01G138800 Manihot esculenta HOM05D000093 ORTHO05D005356 3.9e-10 67.8 59 49.2
FvH4_1g12750 Fragaria vesca HOM05D000093 ORTHO05D005356 6.6e-10 67.0 57 50.9
FAN19G0662 Fragaria x ananassa HOM05D000093 ORTHO05D005356 6.6e-10 67.0 57 50.9
FAN23G2876 Fragaria x ananassa HOM05D000093 ORTHO05D005356 6.6e-10 67.0 57 50.9
FAN28G1204 Fragaria x ananassa HOM05D000093 ORTHO05D005356 6.6e-10 67.0 57 50.9
Lj4g0006703 Lotus japonicus HOM05D000093 ORTHO05D005356 6.6e-10 67.0 59 49.2
TWI09G1613 Tripterygium wilfordii HOM05D000093 ORTHO05D005356 6.6e-10 67.0 61 49.2
Eucgr.I02403 Eucalyptus grandis HOM05D000093 ORTHO05D005356 8.6e-10 66.6 57 50.9
Gohir.A12G062800 Gossypium hirsutum HOM05D000093 ORTHO05D005356 1.1e-09 66.2 59 47.5
Gohir.D12G062700 Gossypium hirsutum HOM05D000093 ORTHO05D005356 1.5e-09 65.9 57 49.1
Gorai.008G065700 Gossypium raimondii HOM05D000093 ORTHO05D005356 1.5e-09 65.9 57 49.1
RcHm_v2.0_Chr2g0100851 Rosa chinensis HOM05D000093 ORTHO05D005356 1.5e-09 65.9 57 49.1
Ca_22336_v3 Cicer arietinum L. HOM05D000093 ORTHO05D005356 2.5e-09 65.1 59 49.2
MELO3C007856.2 Cucumis melo HOM05D000093 ORTHO05D005356 2.5e-09 65.1 57 49.1
CsaV3_6G046570 Cucumis sativus L. HOM05D000093 ORTHO05D005356 2.5e-09 65.1 57 49.1
TPR.G21532 Trifolium pratense HOM05D000093 ORTHO05D005356 2.5e-09 65.1 66 48.5
Atru.chr3.700 Acer truncatum HOM05D000093 ORTHO05D005356 3.3e-09 64.7 52 51.9
CiPaw.07G049400 Carya illinoinensis HOM05D000093 ORTHO05D005356 3.3e-09 64.7 52 51.9
FAN26G1162 Fragaria x ananassa HOM05D000093 ORTHO05D005356 3.3e-09 64.7 57 49.1
Medtr8g076940 Medicago truncatula HOM05D000093 ORTHO05D005356 3.3e-09 64.7 59 49.2
Ciclev10027167m.g Citrus clementina HOM05D000093 ORTHO05D005356 4.3e-09 64.3 61 44.3
FvH4_6g26890 Fragaria vesca HOM05D000093 ORTHO05D005356 4.3e-09 64.3 52 51.9
FAN05G0399 Fragaria x ananassa HOM05D000093 ORTHO05D005356 4.3e-09 64.3 52 51.9
Cc07_g09920 Coffea canephora HOM05D000093 ORTHO05D005356 5.6e-09 63.9 62 45.2
Nitab4.5_0000723g0230 Nicotiana tabacum HOM05D000093 ORTHO05D005356 5.6e-09 63.9 60 46.7
Atru.chr3.654 Acer truncatum HOM05D000093 ORTHO05D005356 7.3e-09 63.5 52 50.0
CiPaw.07G049500 Carya illinoinensis HOM05D000093 ORTHO05D005356 7.3e-09 63.5 57 47.4
Haze_03855 Corylus avellana HOM05D000093 ORTHO05D005356 7.3e-09 63.5 52 50.0
Cfa006897 Carpinus fangiana HOM05D000093 ORTHO05D005356 9.5e-09 63.2 52 51.9
Prupe.7G158700 Prunus persica HOM05D000093 ORTHO05D005356 9.5e-09 63.2 57 47.4
Lj4g0022048 Lotus japonicus HOM05D000093 ORTHO05D005356 1.2e-08 62.8 61 42.6
PSO541G4972 Papaver somniferum HOM05D000093 ORTHO05D005356 1.2e-08 62.8 39 61.5
Sed0025921 Sechium edule HOM05D000093 ORTHO05D005356 1.2e-08 62.8 57 47.4
Dinv40020 Davidia involucrata HOM05D000093 ORTHO05D005356 1.6e-08 62.4 58 46.6
Migut.D01565 Erythranthe guttata HOM05D000093 ORTHO05D005356 1.6e-08 62.4 59 44.1
QL06p035384 Quercus lobata HOM05D000093 ORTHO05D005356 1.6e-08 62.4 57 47.4
ClCG01G019850 Citrullus lanatus HOM05D000093 ORTHO05D005356 2.1e-08 62.0 57 45.6
Glyma.16G133800 Glycine max HOM05D000093 ORTHO05D005356 2.8e-08 61.6 59 45.8
Phvul.003G256500 Phaseolus vulgaris HOM05D000093 ORTHO05D005356 4.7e-08 60.8 59 45.8
COL.COLO4_22028 Corchorus olitorius HOM05D000093 ORTHO05D005356 8.1e-08 60.1 59 42.4
Manes.18G094900 Manihot esculenta HOM05D000093 ORTHO05D005356 2.4e-07 58.5 57 45.6
ClCG08G014820 Citrullus lanatus HOM05D000093 ORTHO05D005356 3.1e-07 58.2 32 71.9
THA.LOC104813233 Tarenaya hassleriana HOM05D000093 ORTHO05D005356 6.8e-07 57.0 40 57.5
MD15G1255700 Malus domestica HOM05D000093 ORTHO05D005356 3.4e-06 54.7 57 40.4


User provided reference genes

Program Settings