Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 0.0e+00 1134.8 635 100.0
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 8.8e-239 830.5 566 87.1
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 2.3e-231 805.8 566 86.2
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.7e-197 693.3 566 73.3
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.3e-194 683.7 566 72.3
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 3.8e-173 612.5 569 70.1
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 5.7e-137 492.3 389 69.7
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.2e-123 448.0 579 48.9
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.2e-123 448.0 612 52.5
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 3.4e-121 439.9 619 50.7
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 2.4e-119 433.7 504 54.4
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 3.8e-117 426.4 598 50.7
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 4.2e-116 422.9 594 48.7
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 9.5e-116 421.8 616 45.8
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 4.0e-114 416.4 501 51.5
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 1.7e-112 411.0 612 47.9
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.6e-110 404.4 525 49.3
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 2.7e-110 403.7 585 46.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.5e-110 403.3 600 47.0
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 3.8e-109 399.8 588 45.9
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 2.1e-107 394.0 550 46.5
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.1e-107 394.0 527 47.2
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.0e-106 391.7 536 47.9
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.4e-106 391.3 528 48.7
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.4e-106 391.3 550 48.0
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 4.0e-106 389.8 540 48.3
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 4.0e-106 389.8 546 48.2
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 4.4e-105 386.3 525 48.0
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 9.8e-105 385.2 584 47.3
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.9e-104 383.6 511 47.6
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.7e-104 383.3 513 48.3
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 6.4e-104 382.5 539 48.6
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 8.3e-104 382.1 540 47.6
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.1e-103 381.7 607 52.4
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 5.4e-103 379.4 528 47.0
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 7.0e-103 379.0 519 47.6
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 9.2e-103 378.6 508 46.5
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.3e-101 374.8 526 47.9
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.7e-101 374.4 525 48.0
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 5.0e-101 372.9 611 43.7
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.1e-100 371.7 522 45.6
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.9e-100 370.9 530 50.0
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 1.6e-99 367.9 510 47.3
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 2.1e-99 367.5 516 45.7
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 4.7e-99 366.3 513 49.1
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 4.7e-99 366.3 508 47.8
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.1e-98 365.2 526 47.1
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 3.1e-98 363.6 590 44.9
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 3.4e-97 360.1 514 48.4
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 4.4e-97 359.8 520 46.3
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 5.8e-97 359.4 578 45.0
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.3e-96 358.2 509 48.3
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.2e-96 357.5 509 47.3
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 3.7e-96 356.7 509 47.3
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.1e-95 355.1 514 47.1
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.2e-95 353.6 501 46.3
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 5.4e-95 352.8 508 46.3
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 7.0e-95 352.4 502 47.4
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 7.0e-95 352.4 525 45.7
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 9.2e-95 352.1 488 47.5
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.2e-94 351.7 492 47.4
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 2.1e-94 350.9 462 49.4
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 7.8e-94 349.0 491 47.5
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.0e-93 348.6 578 43.3
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.3e-93 348.2 486 46.1
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 2.3e-93 347.4 540 44.8
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 8.6e-93 345.5 520 45.8
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.1e-92 345.1 496 45.8
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 1.5e-92 344.7 516 45.2
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 4.3e-92 343.2 517 44.5
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 7.3e-92 342.4 516 44.6
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 2.8e-91 340.5 523 45.3
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 8.1e-91 339.0 521 43.2
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 8.1e-91 339.0 515 45.0
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.1e-90 338.6 604 42.7
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.4e-90 338.2 510 45.5
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 2.3e-90 337.4 494 48.0
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 3.1e-90 337.0 522 44.6
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.0e-90 336.7 507 45.6
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.3e-88 331.6 499 47.1
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 2.9e-88 330.5 497 43.9
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.4e-87 328.2 514 43.0
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 5.4e-87 326.2 518 44.6
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.6e-86 324.7 644 38.8
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 4.6e-86 323.2 532 44.5
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 1.7e-85 321.2 517 43.9
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 3.0e-85 320.5 518 43.8
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.1e-84 318.5 497 43.5
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.5e-84 318.2 522 43.3
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.5e-84 317.4 519 42.8
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 5.6e-84 316.2 517 42.4
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.3e-84 315.8 522 42.3
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 8.9e-82 308.9 509 41.5
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 2.0e-81 307.8 539 42.3
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 5.8e-81 306.2 502 41.8
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.7e-80 304.7 521 42.0
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 8.4e-80 302.4 521 41.8
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.9e-79 301.2 492 44.7
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 9.2e-79 298.9 496 43.1
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.6e-78 298.1 495 42.8
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 6.0e-78 296.2 498 42.8
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 7.8e-78 295.8 492 42.5
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 3.0e-77 293.9 510 41.8
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 1.5e-76 291.6 535 39.1
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 3.3e-76 290.4 498 41.4
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 1.2e-75 288.5 504 41.5
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 1.2e-75 288.5 504 41.5
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 2.1e-75 287.7 501 42.1
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 4.7e-75 286.6 497 40.4
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 8.1e-75 285.8 517 39.8
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 4.4e-73 280.0 297 55.9
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 8.4e-72 275.8 174 82.2
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 3.2e-71 273.9 518 40.5
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 5.1e-69 266.5 302 55.3
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 4.0e-58 230.3 301 48.8
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 3.8e-56 223.8 492 38.2
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.8e-56 223.8 550 36.2
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.1e-55 222.2 505 37.0
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.1e-55 222.2 505 37.0
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 2.5e-55 221.1 506 37.2
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.5e-41 173.7 143 65.7
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 9.4e-39 166.0 296 38.9
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 6.1e-38 163.3 545 32.5
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.3e-37 161.4 369 35.0
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 2.2e-35 154.8 558 31.4
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.3e-35 153.3 364 34.3
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-34 152.1 327 37.3
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.6e-30 138.7 452 29.2
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 2.2e-27 128.3 199 45.7
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.8e-27 127.9 102 68.6
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 5.3e-26 123.6 380 32.6
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 9.4e-23 112.8 484 30.6
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.7e-22 111.3 88 64.8
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.4e-21 109.0 664 27.4
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 7.4e-20 103.2 233 39.1
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.8e-19 100.5 101 51.5
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 6.3e-19 100.1 130 50.8
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 3.1e-18 97.8 233 35.6
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.0e-18 96.7 178 36.5
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.0e-17 95.1 108 51.9
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.0e-17 95.1 138 39.1
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.0e-16 92.8 125 45.6
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.0e-13 82.8 496 27.6
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.6e-12 78.2 185 38.4
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.7e-11 75.5 92 46.7
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 3.5e-09 67.8 111 36.0
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 7.2e-07 60.1 75 44.0
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 9.4e-07 59.7 399 25.1


User provided reference genes

Program Settings