Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003558 Solanum tuberosum HOM05D000044 ORTHO05D004085 6.8e-27 123.2 62 100.0
PGSC0003DMG400012668 Solanum tuberosum HOM05D000044 ORTHO05D004085 2.5e-21 104.8 56 92.9
Solyc02g085930.3 Solanum lycopersicum HOM05D000044 ORTHO05D004085 8.0e-20 99.8 56 87.5
Peaxi162Scf01260g00117 Petunia axillaris HOM05D000044 ORTHO05D004085 2.3e-19 98.2 56 87.5
Nitab4.5_0003964g0030 Nicotiana tabacum HOM05D000039 ORTHO05D004085 4.0e-19 97.4 56 85.7
PGSC0003DMG400012667 Solanum tuberosum HOM05D000044 ORTHO05D004085 4.0e-19 97.4 56 87.5
Peaxi162Scf00707g00020 Petunia axillaris HOM05D000044 ORTHO05D004085 1.5e-18 95.5 56 83.9
Nitab4.5_0014686g0010 Nicotiana tabacum HOM05D000044 ORTHO05D004085 2.6e-18 94.7 56 83.9
Peaxi162Scf00394g00418 Petunia axillaris HOM05D000039 ORTHO05D004085 1.3e-17 92.4 56 78.6
CAN.G625.13 Capsicum annuum HOM05D000039 ORTHO05D004085 1.7e-17 92.0 56 80.4
Nitab4.5_0007988g0010 Nicotiana tabacum HOM05D000039 ORTHO05D004085 2.9e-17 91.3 55 81.8
Nitab4.5_0014393g0010 Nicotiana tabacum HOM05D000039 ORTHO05D004085 4.9e-17 90.5 55 81.8
Nitab4.5_0000682g0070 Nicotiana tabacum HOM05D000044 ORTHO05D004085 4.1e-16 87.4 55 80.0
Nitab4.5_0000682g0080 Nicotiana tabacum HOM05D000039 ORTHO05D004085 4.1e-16 87.4 55 80.0
Nitab4.5_0000222g0240 Nicotiana tabacum HOM05D000044 ORTHO05D004085 5.4e-16 87.0 56 76.8
Nitab4.5_0002637g0030 Nicotiana tabacum HOM05D000039 ORTHO05D004085 7.0e-16 86.7 53 81.1
RhsimUnG0156300 Rhododendron simsii HOM05D000218 ORTHO05D004085 4.3e-13 77.4 58 65.5
Rhsim06G0241800 Rhododendron simsii HOM05D000044 ORTHO05D004085 7.3e-13 76.6 56 67.9
Cc05_g02980 Coffea canephora HOM05D000044 ORTHO05D004085 9.5e-13 76.3 56 66.1
Actinidia07386 Actinidia chinensis HOM05D000044 ORTHO05D004085 1.6e-12 75.5 56 64.3
TAR626G0795 Trochodendron aralioides HOM05D000044 ORTHO05D004085 1.6e-12 75.5 56 64.3
Cpa.g.sc34.24 Carica papaya HOM05D000039 ORTHO05D004085 2.1e-12 75.1 56 66.1
Rhsim06G0230200 Rhododendron simsii HOM05D000218 ORTHO05D050661 2.1e-12 75.1 56 66.1
vmacro11703 Vaccinium macrocarpon HOM05D000044 ORTHO05D004085 2.8e-12 74.7 56 66.1
Prupe.4G276800 Prunus persica HOM05D000044 ORTHO05D004085 4.7e-12 73.9 56 66.1
Atru.chr1.129 Acer truncatum HOM05D000044 ORTHO05D004085 6.2e-12 73.6 56 66.1
CANSAT80G1790 Cannabis sativa HOM05D000044 ORTHO05D004085 6.2e-12 73.6 56 67.9
Prupe.7G035800 Prunus persica HOM05D000044 ORTHO05D004085 8.1e-12 73.2 56 66.1
Ca_03605_v3 Cicer arietinum L. HOM05D000044 ORTHO05D004085 1.1e-11 72.8 56 66.1
Ca_29951_v3 Cicer arietinum L. HOM05D000044 ORTHO05D004085 1.1e-11 72.8 56 66.1
FAN21G0720 Fragaria x ananassa HOM05D000044 ORTHO05D004085 1.1e-11 72.8 61 60.7
Medtr2g067440 Medicago truncatula HOM05D000044 ORTHO05D004085 1.1e-11 72.8 56 66.1
Medtr2g077990 Medicago truncatula HOM05D000044 ORTHO05D004085 1.1e-11 72.8 56 66.1
Medtr2g078560 Medicago truncatula HOM05D000044 ORTHO05D004085 1.1e-11 72.8 56 66.1
Eucgr.F01472 Eucalyptus grandis HOM05D000039 ORTHO05D004085 1.8e-11 72.0 56 60.7
QL02p013226 Quercus lobata HOM05D000044 ORTHO05D004085 1.8e-11 72.0 56 66.1
RcHm_v2.0_Chr5g0025661 Rosa chinensis HOM05D000044 ORTHO05D004085 1.8e-11 72.0 61 59.0
Dinv08138 Davidia involucrata HOM05D000039 ORTHO05D004085 2.3e-11 71.6 56 60.7
FvH4_3g15220 Fragaria vesca HOM05D000044 ORTHO05D004085 2.3e-11 71.6 61 60.7
FAN11G3443 Fragaria x ananassa HOM05D000044 ORTHO05D004085 2.3e-11 71.6 61 60.7
FAN16G1038 Fragaria x ananassa HOM05D000044 ORTHO05D004085 2.3e-11 71.6 61 60.7
FAN25G1014 Fragaria x ananassa HOM05D000044 ORTHO05D004085 2.3e-11 71.6 61 60.7
Lalb_Chr25g0284761 Lupinus albus HOM05D000044 ORTHO05D004085 2.3e-11 71.6 56 64.3
Medtr2g077980 Medicago truncatula HOM05D000044 ORTHO05D004085 2.3e-11 71.6 56 64.3
Medtr2g078610 Medicago truncatula HOM05D000044 ORTHO05D004085 2.3e-11 71.6 56 66.1
Psat1g013480 Pisum sativum HOM05D000044 ORTHO05D004085 2.3e-11 71.6 56 64.3
FvH4_3g15230 Fragaria vesca HOM05D000039 ORTHO05D004085 3.1e-11 71.2 56 62.5
FAN16G0885 Fragaria x ananassa HOM05D000039 ORTHO05D004085 3.1e-11 71.2 56 62.5
FAN25G0142 Fragaria x ananassa HOM05D000039 ORTHO05D004085 3.1e-11 71.2 56 62.5
CSS0021870 Camellia sinensis var. sinensis HOM05D000039 ORTHO05D004085 4.0e-11 70.9 56 60.7
Glyma.15G259500 Glycine max HOM05D000044 ORTHO05D004085 4.0e-11 70.9 56 64.3
Lj3g0014381 Lotus japonicus HOM05D000044 ORTHO05D004085 4.0e-11 70.9 56 62.5
Ciclev10017909m.g Citrus clementina HOM05D000044 ORTHO05D004085 5.2e-11 70.5 56 64.3
FAN11G3908 Fragaria x ananassa HOM05D000039 ORTHO05D004085 5.2e-11 70.5 56 62.5
MD05G1224400 Malus domestica HOM05D000039 ORTHO05D004085 6.8e-11 70.1 61 57.4
Glyma.08G168000 Glycine max HOM05D000044 ORTHO05D004085 8.9e-11 69.7 56 62.5
Nitab4.5_0008172g0020 Nicotiana tabacum HOM05D000044 ORTHO05D004085 8.9e-11 69.7 41 80.5
VMungo1080G0559 Vigna mungo HOM05D000044 ORTHO05D004085 8.9e-11 69.7 56 62.5
ClCG09G022680 Citrullus lanatus HOM05D000044 ORTHO05D004085 1.2e-10 69.3 56 64.3
MELO3C012610.2 Cucumis melo HOM05D000044 ORTHO05D004085 1.2e-10 69.3 56 64.3
CsaV3_7G022880 Cucumis sativus L. HOM05D000044 ORTHO05D004085 1.2e-10 69.3 56 64.3
Phvul.005G059500 Phaseolus vulgaris HOM05D000044 ORTHO05D004085 1.2e-10 69.3 56 60.7
RcHm_v2.0_Chr5g0025671 Rosa chinensis HOM05D000044 ORTHO05D004085 1.2e-10 69.3 56 60.7
TPR.G33832 Trifolium pratense HOM05D000044 ORTHO05D004085 1.2e-10 69.3 56 62.5
TWI53G1536 Tripterygium wilfordii HOM05D000044 ORTHO05D004085 1.2e-10 69.3 56 58.9
Phvul.005G059700 Phaseolus vulgaris HOM05D000044 ORTHO05D004085 1.5e-10 68.9 56 60.7
Sed0008472 Sechium edule HOM05D000039 ORTHO05D004085 1.5e-10 68.9 56 58.9
Atru.chr1.127 Acer truncatum HOM05D000044 ORTHO05D004085 2.0e-10 68.6 56 62.5
Haze_07822 Corylus avellana HOM05D000039 ORTHO05D004085 2.6e-10 68.2 56 60.7
FAN21G3494 Fragaria x ananassa HOM05D000044 ORTHO05D004085 2.6e-10 68.2 56 58.9
CiPaw.12G008200 Carya illinoinensis HOM05D000039 ORTHO05D004085 3.4e-10 67.8 56 58.9
Cfa022971 Carpinus fangiana HOM05D000039 ORTHO05D004085 4.4e-10 67.4 56 60.7
Potri.007G067200 Populus trichocarpa HOM05D000044 ORTHO05D004085 5.8e-10 67.0 54 61.1
Sabra07G0053500 Salix brachista HOM05D000044 ORTHO05D004085 7.5e-10 66.6 56 57.1
Thecc.07G166500 Theobroma cacao HOM05D000044 ORTHO05D004085 9.8e-10 66.2 56 60.7
Medtr2g078280 Medicago truncatula HOM05D000044 ORTHO05D004085 1.3e-09 65.9 51 66.7
arahy.Tifrunner.gnm1.ann1.RJ01H2 Arachis hypogaea HOM05D000044 ORTHO05D004085 2.2e-09 65.1 56 57.1
arahy.Tifrunner.gnm1.ann1.UJVA88 Arachis hypogaea HOM05D000044 ORTHO05D004085 2.2e-09 65.1 56 57.1
EL10Ac7g16551 Beta vulgaris HOM05D000044 ORTHO05D004085 2.2e-09 65.1 56 57.1
Sed0006609 Sechium edule HOM05D000039 ORTHO05D004085 2.2e-09 65.1 54 61.1
Hund20243 Selenicereus undatus HOM05D000039 ORTHO05D004085 2.2e-09 65.1 54 63.0
GSVIVG01010156001 Vitis vinifera HOM05D000044 ORTHO05D004085 2.9e-09 64.7 56 57.1
MD10G1206100 Malus domestica HOM05D000044 ORTHO05D004085 4.9e-09 63.9 56 57.1
AUR62040448 Chenopodium quinoa HOM05D000044 ORTHO05D004085 1.4e-08 62.4 54 57.4
AUR62042004 Chenopodium quinoa HOM05D000044 ORTHO05D004085 1.4e-08 62.4 54 57.4
PGR083G2485 Punica granatum HOM05D000044 ORTHO05D004085 1.4e-08 62.4 56 55.4
Hma1.2p1_0151F.1_g067540 Hydrangea macrophylla HOM05D000039 ORTHO05D004085 7.1e-08 60.1 56 55.4
Hma1.2p1_0637F.1_g193375 Hydrangea macrophylla HOM05D000039 ORTHO05D004085 7.1e-08 60.1 56 55.4
Ah.15g092350 Amaranthus hybridus HOM05D000044 ORTHO05D004085 7.8e-07 56.6 56 51.8
SGA_v2.0_scaffold239G44029 Striga asiatica HOM05D000044 ORTHO05D004085 1.0e-06 56.2 56 55.4
Manes.11G046500 Manihot esculenta HOM05D000044 ORTHO05D004085 2.3e-06 55.1 56 53.6
Sc14g0007670 Simmondsia chinensis HOM05D000044 ORTHO05D004085 3.0e-06 54.7 56 51.8
Actinidia07385 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.9e-06 54.3 47 55.3
Aqoxy7G03802 Aquilegia oxysepala HOM05D000044 ORTHO05D004085 5.1e-06 53.9 56 53.6
Medtr2g067310 Medicago truncatula HOM05D000292 ORTHO05D000172 5.1e-06 53.9 51 52.9
Manes.11G044766 Manihot esculenta HOM05D000044 ORTHO05D004085 8.6e-06 53.1 56 51.8
Manes.11G045000 Manihot esculenta HOM05D000044 ORTHO05D004085 8.6e-06 53.1 56 51.8
Sabra01G0145200 Salix brachista HOM05D000044 ORTHO05D004085 8.6e-06 53.1 56 51.8


User provided reference genes

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