Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 3.0e-99 365.2 180 100.0
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 2.5e-98 362.1 180 98.3
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 2.5e-98 362.1 180 98.3
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 2.5e-98 362.1 180 98.9
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 1.7e-94 349.4 180 95.6
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 2.5e-90 335.5 180 86.1
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.6e-89 332.8 180 86.1
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 1.6e-89 332.8 180 87.2
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 86.7
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 2.8e-89 332.0 180 86.7
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 86.7
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 8.1e-89 330.5 180 86.7
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 8.1e-89 330.5 180 86.7
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 8.1e-89 330.5 180 85.0
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 86.7
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 86.7
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 1.8e-88 329.3 179 84.9
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 1.8e-88 329.3 180 86.1
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 84.4
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 86.1
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 85.6
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 85.6
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 4.0e-88 328.2 180 84.4
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 4.0e-88 328.2 180 84.4
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 6.9e-88 327.4 180 85.0
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 6.9e-88 327.4 180 85.6
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 1.2e-87 326.6 180 84.4
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 83.9
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 83.3
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 83.9
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 82.2
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 3.4e-87 325.1 180 83.3
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 82.8
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 7.6e-87 323.9 180 84.4
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 83.9
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 3.8e-86 321.6 180 82.2
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 3.8e-86 321.6 180 82.2
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 83.3
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 83.3
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 82.2
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 82.2
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 6.4e-86 320.9 180 82.2
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 81.7
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 81.7
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 81.7
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.4e-85 319.7 180 82.2
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 82.2
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 81.1
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 81.1
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 3.2e-85 318.5 180 81.7
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 81.1
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 81.1
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 5.5e-85 317.8 179 84.4
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 5.5e-85 317.8 178 82.6
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 80.6
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 81.1
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 81.1
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 80.6
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 80.0
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 2.7e-84 315.5 199 77.4
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 4.6e-84 314.7 180 82.2
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 6.0e-84 314.3 180 81.1
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 3.0e-83 312.0 178 79.8
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 5.1e-83 311.2 180 79.4
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 5.1e-83 311.2 181 81.2
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 1.9e-82 309.3 206 73.8
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 2.5e-82 308.9 159 94.3
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 4.3e-82 308.1 181 80.1
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 4.3e-82 308.1 180 80.6
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 4.3e-82 308.1 180 78.9
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 7.4e-82 307.4 165 86.7
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 6.2e-81 304.3 178 79.2
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 1.4e-80 303.1 178 78.7
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 4.0e-80 301.6 203 71.9
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 5.3e-80 301.2 187 77.0
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 1.3e-78 296.6 160 88.1
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 1.3e-78 296.6 180 77.8
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 4.9e-78 294.7 180 81.7
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 1.1e-77 293.5 159 88.7
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.3e-75 286.6 175 76.0
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 1.8e-75 286.2 160 85.0
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.3e-75 285.8 174 75.9
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 1.1e-74 283.5 161 81.4
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 9.6e-74 280.4 156 83.3
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 2.8e-73 278.9 178 74.2
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 9.0e-72 273.9 172 78.5
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 1.5e-71 273.1 177 70.6
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 1.5e-71 273.1 162 78.4
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 4.5e-71 271.6 164 79.3
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 7.6e-71 270.8 167 75.4
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.3e-70 270.0 160 76.2
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 2.9e-70 268.9 175 67.4
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 3.9e-67 258.5 218 62.4
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 2.5e-66 255.8 139 82.7
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 3.3e-66 255.4 153 78.4
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 6.3e-65 251.1 175 64.0
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 2.4e-64 249.2 175 64.0
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 3.1e-64 248.8 181 72.4
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 2.2e-62 242.7 139 77.7
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 3.3e-58 228.8 171 59.1
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.1e-53 213.8 114 83.3
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 5.7e-50 201.4 174 52.3
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 9.7e-50 200.7 121 76.9
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 5.9e-47 191.4 117 70.9
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 8.8e-43 177.6 130 62.3
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.6e-42 176.0 185 53.0
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.6e-42 176.0 185 53.0
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 9.1e-40 167.5 113 75.2
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 2.9e-38 162.5 176 46.0
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 2.9e-38 162.5 96 78.1
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 5.0e-38 161.8 93 76.3
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 3.2e-37 159.1 174 43.7
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 2.3e-35 152.9 91 74.7
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 6.3e-33 144.8 116 58.6
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 2.4e-32 142.9 177 46.9
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 8.8e-27 124.4 82 67.1
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 2.0e-23 113.2 65 81.5
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 1.3e-22 110.5 99 56.6
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 5.6e-21 105.1 71 62.0
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 2.8e-20 102.8 100 58.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 5.2e-19 98.6 56 87.5
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 1.2e-18 97.4 56 82.1
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 1.2e-15 87.4 50 82.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.3e-14 83.2 46 84.8
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 9.2e-08 61.2 57 54.4
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 3.0e-06 56.2 38 65.8


User provided reference genes

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