Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 5.3e-201 704.1 355 100.0
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 5.5e-198 694.1 355 98.3
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 1.6e-197 692.6 355 98.3
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 1.3e-183 646.4 355 91.8
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 2.8e-181 638.6 355 89.9
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 1.0e-172 610.1 337 91.1
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 6.0e-160 567.8 352 79.0
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 4.3e-158 561.6 352 78.4
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 9.5e-158 560.5 352 79.0
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 1.6e-152 543.1 351 74.6
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 1.6e-152 543.1 353 75.9
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 9.5e-150 533.9 352 75.3
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.1e-149 532.7 353 74.5
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 4.9e-146 521.5 352 73.6
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 4.9e-146 521.5 351 72.1
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 6.4e-146 521.2 353 73.9
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 8.4e-146 520.8 352 70.5
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 1.1e-145 520.4 353 71.7
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 3.2e-145 518.8 352 72.2
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 1.2e-144 516.9 352 71.9
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.2e-144 516.9 353 74.2
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 4.6e-144 515.0 353 72.8
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 6.0e-144 514.6 351 70.4
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 1.3e-143 513.5 353 72.0
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 1.7e-143 513.1 344 74.4
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 1.1e-142 510.4 289 85.5
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 1.1e-142 510.4 353 71.7
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.5e-142 510.0 352 70.2
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.5e-142 510.0 353 73.4
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 1.9e-142 509.6 329 74.5
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 2.5e-142 509.2 354 71.5
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 1.2e-141 506.9 355 69.0
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 4.7e-141 505.0 352 70.5
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 1.4e-140 503.4 360 68.6
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 3.1e-140 502.3 351 69.2
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 3.1e-140 502.3 362 69.9
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.5e-139 500.0 354 68.4
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 2.0e-139 499.6 355 73.0
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 2.0e-139 499.6 353 69.7
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 2.0e-139 499.6 360 69.2
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.6e-139 499.2 363 70.5
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 4.4e-139 498.4 352 69.3
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 7.6e-139 497.7 361 68.1
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 2.2e-138 496.1 352 69.6
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 6.4e-138 494.6 329 72.9
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.1e-137 493.8 363 70.2
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.4e-137 493.4 352 69.6
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 2.4e-137 492.7 354 69.8
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 3.2e-137 492.3 351 68.7
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 9.3e-137 490.7 351 68.4
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 1.2e-136 490.3 354 69.5
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.6e-136 490.0 352 71.0
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 2.1e-136 489.6 353 68.3
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 2.1e-136 489.6 355 67.0
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 2.7e-136 489.2 338 71.6
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 3.5e-136 488.8 351 68.4
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 6.0e-136 488.0 351 68.7
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.3e-135 486.9 351 68.1
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 2.3e-135 486.1 312 74.7
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 8.7e-135 484.2 336 70.2
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 8.7e-135 484.2 357 68.1
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 9.6e-134 480.7 311 73.0
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 1.3e-133 480.3 354 68.1
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 6.2e-133 478.0 354 68.1
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 6.2e-133 478.0 355 66.2
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 2.4e-132 476.1 354 68.6
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 2.0e-131 473.0 355 66.5
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 4.5e-131 471.9 356 67.4
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 4.5e-131 471.9 361 66.2
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 5.8e-131 471.5 375 66.7
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 7.6e-131 471.1 316 73.1
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 8.4e-130 467.6 406 60.6
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 8.4e-130 467.6 355 67.0
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 2.4e-129 466.1 361 64.8
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 3.2e-129 465.7 312 71.8
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 5.4e-129 464.9 289 76.5
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 7.1e-129 464.5 375 65.6
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 2.7e-128 462.6 313 70.9
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 7.9e-128 461.1 357 68.1
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.8e-127 459.9 310 72.6
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 2.3e-127 459.5 313 70.6
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.3e-127 459.5 332 69.9
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 1.9e-126 456.4 355 64.2
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 4.3e-126 455.3 311 69.8
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 5.6e-126 454.9 311 69.8
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 7.4e-126 454.5 311 69.8
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 1.3e-125 453.8 310 70.0
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 1.6e-125 453.4 355 63.7
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 8.1e-125 451.1 310 69.0
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 8.1e-125 451.1 310 69.4
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 8.1e-125 451.1 315 69.5
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 1.4e-124 450.3 331 68.9
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 1.8e-124 449.9 303 70.3
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 9.0e-124 447.6 313 68.1
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 9.0e-124 447.6 313 68.1
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 2.0e-123 446.4 303 69.6
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 7.6e-123 444.5 352 64.2
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 7.6e-123 444.5 356 61.5
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 9.9e-123 444.1 355 62.8
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 2.2e-122 443.0 343 66.2
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 8.7e-119 431.0 353 63.7
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 3.7e-117 425.6 350 60.0
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 3.7e-117 425.6 272 74.6
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 4.0e-116 422.2 355 60.6
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 5.3e-116 421.8 299 68.2
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 2.0e-115 419.9 353 61.2
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 3.0e-111 406.0 303 65.0
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 6.7e-111 404.8 365 58.4
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 6.7e-111 404.8 355 56.9
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 3.3e-110 402.5 369 57.5
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 7.4e-110 401.4 230 84.8
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 1.4e-108 397.1 285 71.9
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 1.5e-102 377.1 328 55.8
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 9.1e-100 367.9 306 62.7
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 6.5e-98 361.7 321 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 1.1e-97 360.9 299 56.5
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 7.2e-97 358.2 312 59.3
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 7.2e-97 358.2 304 58.9
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 5.1e-95 352.1 319 57.1
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 9.1e-92 341.3 307 56.0
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.2e-91 340.9 289 60.9
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 3.5e-91 339.3 208 75.0
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.0e-90 337.8 303 55.8
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 3.6e-88 329.3 356 49.2
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 1.0e-87 327.8 266 63.9
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 2.2e-77 293.5 330 44.8
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 1.9e-65 253.8 321 41.1
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 5.9e-59 232.3 156 71.2
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 8.6e-58 228.4 144 74.3
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 4.1e-52 209.5 267 41.9
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 2.7e-51 206.8 286 47.2
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.0e-50 204.9 164 61.0
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 4.7e-48 196.1 155 60.0
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 1.8e-47 194.1 294 39.5
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 3.7e-45 186.4 301 36.9
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 6.4e-45 185.7 254 40.2
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 1.0e-42 178.3 145 62.8
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 1.2e-40 171.4 140 62.9
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 8.3e-37 158.7 114 64.9
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 1.4e-31 141.4 153 48.4
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 4.9e-29 132.9 114 59.6
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 4.2e-28 129.8 314 32.2
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 5.3e-23 112.8 77 67.5
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 4.4e-22 109.8 95 54.7
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.4e-15 88.2 73 57.5
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 2.0e-14 84.3 66 62.1
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 7.6e-14 82.4 54 70.4
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.3e-13 81.6 161 34.8
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 2.2e-13 80.9 57 64.9
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 3.8e-13 80.1 53 73.6
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 5.5e-12 76.3 45 77.8
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 4.6e-11 73.2 43 72.1
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 1.8e-10 71.2 287 23.0
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 1.6e-08 64.7 175 21.1
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 1.8e-07 61.2 163 24.5
RcHm_v2.0_Chr5g0032061 Rosa chinensis HOM05D004767 ORTHO05D005674 3.1e-07 60.5 35 71.4
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 4.0e-07 60.1 126 30.2
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.2e-06 58.5 169 26.6
Manes.04G122700 Manihot esculenta HOM05D001315 ORTHO05D001618 2.0e-06 57.8 158 27.2
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 3.4e-06 57.0 115 30.4
AUR62020514 Chenopodium quinoa HOM05D005323 ORTHO05D006820 4.5e-06 56.6 178 24.2
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 4.5e-06 56.6 208 23.6


User provided reference genes

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