Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 8.0e-97 357.1 178 100.0
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 3.6e-81 305.1 176 85.8
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 2.6e-79 298.9 176 85.2
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 1.3e-75 286.6 176 82.4
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 3.4e-71 271.9 177 79.1
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 4.9e-70 268.1 177 78.0
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 7.3e-66 254.2 168 76.2
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 1.3e-49 200.3 172 61.0
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 2.6e-47 192.6 179 57.0
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 2.6e-47 192.6 178 60.7
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 3.4e-47 192.2 179 57.0
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 8.4e-46 187.6 176 59.7
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.6e-44 183.3 179 56.4
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 4.6e-44 181.8 170 56.5
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 5.1e-43 178.3 174 55.2
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 8.7e-43 177.6 171 55.6
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 5.6e-42 174.9 172 58.1
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.6e-39 166.0 173 55.5
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 2.2e-38 162.9 174 51.7
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 3.8e-38 162.2 173 54.9
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 6.5e-38 161.4 148 60.8
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 1.9e-37 159.8 168 54.8
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 2.5e-37 159.5 166 52.4
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 3.2e-37 159.1 170 54.7
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 3.2e-37 159.1 173 54.9
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 4.2e-37 158.7 166 54.8
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 7.1e-37 157.9 176 53.4
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 9.3e-37 157.5 166 55.4
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 2.1e-36 156.4 177 52.5
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 7.9e-36 154.5 179 50.8
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 7.9e-36 154.5 158 57.6
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.3e-35 153.7 158 57.6
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 1.8e-35 153.3 176 51.1
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 1.8e-35 153.3 179 52.5
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 1.8e-35 153.3 203 51.7
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 3.0e-35 152.5 170 52.4
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 6.7e-35 151.4 172 50.6
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 6.7e-35 151.4 179 52.0
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 8.7e-35 151.0 170 52.4
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 8.7e-35 151.0 167 52.1
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 1.1e-34 150.6 165 52.7
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.5e-34 149.4 171 53.2
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 1.3e-33 147.1 176 54.0
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.7e-33 145.6 162 52.5
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 6.3e-33 144.8 166 51.8
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 1.8e-32 143.3 158 53.8
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.8e-32 143.3 158 54.4
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 2.0e-31 139.8 167 50.3
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 3.4e-31 139.0 194 47.9
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 5.9e-31 138.3 167 51.5
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.3e-30 137.1 175 48.6
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 1.3e-30 137.1 175 48.6
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 1.3e-30 137.1 176 50.6
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 2.2e-30 136.3 172 48.8
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 5.0e-30 135.2 178 49.4
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 9.3e-29 131.0 175 48.0
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 2.3e-27 126.3 119 57.1
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 2.3e-27 126.3 159 49.7
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 3.0e-27 125.9 178 43.3
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 8.8e-27 124.4 176 43.8
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 1.9e-26 123.2 167 46.7
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 9.7e-26 120.9 177 47.5
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 9.7e-26 120.9 181 46.4
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 1.3e-25 120.6 168 44.0
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 1.1e-24 117.5 174 44.8
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 2.0e-23 113.2 170 41.2
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 5.9e-23 111.7 172 45.3
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 1.0e-22 110.9 162 45.7
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 1.3e-22 110.5 179 45.3
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 1.3e-22 110.5 157 47.8
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 1.3e-22 110.5 148 50.7
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 1.3e-22 110.5 176 44.3
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.7e-22 110.2 175 41.7
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 1.7e-22 110.2 172 44.8
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 1.7e-22 110.2 180 46.1
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 3.8e-22 109.0 172 43.0
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.4e-21 107.1 176 43.2
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 4.2e-21 105.5 183 45.4
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.6e-20 103.6 175 41.1
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 2.1e-20 103.2 167 41.3
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 7.9e-20 101.3 175 45.1
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.8e-19 100.1 174 40.2
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 3.9e-19 99.0 170 41.2
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 6.7e-19 98.2 165 41.2
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 6.7e-19 98.2 159 46.5
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 1.1e-18 97.4 151 49.0
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.0e-18 96.7 176 40.9
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 7.4e-18 94.7 165 43.0
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 9.7e-18 94.4 210 36.2
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 9.7e-18 94.4 174 42.0
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 1.3e-17 94.0 165 42.4
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 2.2e-17 93.2 210 35.7
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 2.2e-17 93.2 209 36.8
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 3.7e-17 92.4 162 41.4
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 3.7e-17 92.4 176 43.2
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 6.3e-17 91.7 165 40.6
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 6.3e-17 91.7 165 40.6
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 6.3e-17 91.7 165 40.6
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 6.3e-17 91.7 182 42.9
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 1.1e-16 90.9 164 42.1
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 1.1e-16 90.9 164 42.1
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 4.1e-16 89.0 165 41.8
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 5.3e-16 88.6 143 44.1
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 2.6e-15 86.3 160 41.9
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 7.7e-15 84.7 164 40.9
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 5.0e-14 82.0 101 51.5
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 5.0e-14 82.0 157 38.9
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 1.1e-13 80.9 124 44.4
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 1.4e-13 80.5 141 43.3
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 2.5e-13 79.7 91 52.7
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 8.0e-12 74.7 82 52.4
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 5.2e-11 72.0 144 37.5
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 4.4e-10 68.9 132 40.2
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 9.7e-10 67.8 181 38.1
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 2.2e-09 66.6 92 42.4
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 2.8e-09 66.2 65 60.0
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 3.7e-09 65.9 174 36.2
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 4.8e-09 65.5 157 38.2
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 8.2e-09 64.7 147 41.5
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.1e-08 64.3 64 48.4
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.1e-08 64.3 64 48.4
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 3.1e-08 62.8 123 36.6
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 5.3e-08 62.0 161 35.4
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 9.1e-08 61.2 166 33.7
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 3.5e-07 59.3 146 38.4
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.5e-07 58.9 126 36.5
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 1.0e-06 57.8 79 41.8
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 2.2e-06 56.6 179 33.0
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 3.8e-06 55.8 150 34.7


User provided reference genes

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