Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 4.3e-92 341.3 170 100.0
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 3.3e-84 315.1 166 92.8
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 2.7e-57 225.7 128 88.3
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.7e-56 223.0 132 84.8
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 1.7e-56 223.0 132 84.8
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 2.2e-43 179.5 129 75.2
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.3e-39 165.6 134 68.7
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.8e-38 162.5 134 67.9
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 3.7e-35 152.1 143 60.1
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.2e-20 104.0 126 49.2
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 7.6e-20 101.3 127 46.5
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 3.2e-18 95.9 113 47.8
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 5.4e-18 95.1 133 45.1
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 2.7e-17 92.8 127 50.4
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 3.5e-17 92.4 125 47.2
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 4.6e-17 92.0 128 43.0
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 4.6e-17 92.0 131 43.5
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 6.0e-17 91.7 145 41.4
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 7.8e-17 91.3 118 47.5
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 1.7e-16 90.1 130 46.9
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 3.0e-16 89.4 113 49.6
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 3.0e-16 89.4 138 42.0
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 6.6e-16 88.2 109 49.5
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 1.1e-15 87.4 109 47.7
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.5e-15 87.0 149 40.3
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.9e-15 86.7 124 46.8
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 1.9e-15 86.7 134 41.8
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 2.5e-15 86.3 117 44.4
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 5.6e-15 85.1 114 47.4
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 7.3e-15 84.7 131 43.5
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 9.6e-15 84.3 112 46.4
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 9.6e-15 84.3 112 43.8
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 9.6e-15 84.3 117 43.6
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 9.6e-15 84.3 132 43.2
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.3e-14 84.0 124 40.3
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 2.1e-14 83.2 124 46.0
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 2.1e-14 83.2 119 46.2
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.1e-14 83.2 126 43.7
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 2.1e-14 83.2 128 41.4
Sopen04g004520 Solanum pennellii HOM05D001773 ORTHO05D001710 2.1e-14 83.2 70 64.3
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 2.8e-14 82.8 107 44.9
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 2.8e-14 82.8 115 45.2
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 3.6e-14 82.4 117 45.3
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.6e-14 82.4 123 42.3
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 3.6e-14 82.4 115 42.6
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 4.8e-14 82.0 128 45.3
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 6.2e-14 81.6 146 41.1
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 6.2e-14 81.6 119 46.2
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 8.1e-14 81.3 116 45.7
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 8.1e-14 81.3 128 43.0
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 1.1e-13 80.9 112 44.6
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.8e-13 80.1 123 42.3
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.8e-13 80.1 126 42.1
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 2.4e-13 79.7 135 41.5
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 2.4e-13 79.7 114 42.1
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 3.1e-13 79.3 145 37.9
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 3.1e-13 79.3 146 39.0
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 3.1e-13 79.3 112 42.9
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 3.1e-13 79.3 112 42.9
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 4.0e-13 79.0 112 42.0
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 4.0e-13 79.0 112 42.0
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 5.3e-13 78.6 134 38.1
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 6.9e-13 78.2 142 35.9
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 6.9e-13 78.2 113 46.9
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 9.0e-13 77.8 121 44.6
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 9.0e-13 77.8 80 52.5
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.2e-12 77.4 115 42.6
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.2e-12 77.4 121 46.3
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 1.5e-12 77.0 80 52.5
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 1.5e-12 77.0 122 41.0
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 2.6e-12 76.3 130 40.8
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 2.6e-12 76.3 122 41.0
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 2.6e-12 76.3 122 42.6
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 3.4e-12 75.9 108 44.4
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 3.4e-12 75.9 143 40.6
Sopen01g006830 Solanum pennellii HOM05D001773 ORTHO05D001710 4.5e-12 75.5 45 82.2
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 5.8e-12 75.1 131 38.2
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 7.6e-12 74.7 116 45.7
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 9.9e-12 74.3 142 33.1
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 1.3e-11 73.9 118 44.1
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 1.3e-11 73.9 47 72.3
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 2.2e-11 73.2 129 38.0
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 2.9e-11 72.8 44 79.5
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.9e-11 72.8 44 79.5
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.9e-11 72.8 44 79.5
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 3.8e-11 72.4 121 42.1
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 3.8e-11 72.4 110 44.5
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 1.1e-10 70.9 106 46.2
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 1.1e-10 70.9 113 42.5
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.1e-10 70.9 115 40.0
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 1.4e-10 70.5 111 44.1
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 1.4e-10 70.5 119 40.3
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.9e-10 70.1 113 42.5
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 1.9e-10 70.1 96 44.8
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 1.9e-10 70.1 107 37.4
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 2.4e-10 69.7 49 67.3
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 2.4e-10 69.7 120 41.7
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.2e-10 69.3 129 37.2
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 4.2e-10 68.9 113 42.5
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 5.4e-10 68.6 64 51.6
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 7.1e-10 68.2 118 36.4
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 1.2e-09 67.4 47 66.0
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.2e-09 67.4 122 41.0
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 4.6e-09 65.5 47 66.0
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 4.6e-09 65.5 110 40.9
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 7.9e-09 64.7 81 46.9
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 1.3e-08 63.9 89 47.2
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 5.1e-08 62.0 79 45.6
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 2.5e-07 59.7 47 57.4
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 1.3e-06 57.4 106 41.5


User provided reference genes

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