Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.4e-179 632.9 330 100.0
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.3e-156 554.3 329 87.5
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 9.2e-155 550.4 329 86.0
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.7e-154 548.9 329 85.7
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 5.9e-154 547.7 329 85.7
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 8.6e-153 543.9 329 85.1
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 3.7e-148 528.5 330 83.3
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.9e-147 526.2 328 80.8
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 2.4e-115 419.5 333 67.0
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.0e-113 414.1 331 66.8
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 5.6e-112 408.3 332 65.4
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 4.8e-111 405.2 331 65.3
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.1e-110 404.1 331 65.3
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.7e-108 396.7 333 64.9
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 2.9e-108 396.0 332 62.0
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.2e-107 392.1 328 63.7
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.1e-106 389.8 333 63.4
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 3.5e-106 389.0 333 61.9
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.0e-105 387.5 332 61.4
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.3e-105 387.1 333 62.2
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 8.7e-105 384.4 330 63.0
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.1e-104 384.0 330 63.0
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.5e-104 383.6 333 62.5
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.9e-104 383.3 334 62.0
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.3e-104 382.5 331 62.8
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 5.6e-104 381.7 329 62.9
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.3e-103 380.6 333 61.3
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.1e-103 377.9 332 61.1
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 3.1e-102 375.9 336 61.6
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 5.3e-102 375.2 333 61.0
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.9e-102 374.8 327 61.8
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 1.2e-101 374.0 333 60.4
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 2.6e-101 372.9 332 59.6
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 2.2e-100 369.8 333 59.2
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 1.9e-99 366.7 334 60.2
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 3.2e-99 365.9 333 61.6
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 3.2e-99 365.9 334 60.2
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.6e-98 363.6 386 51.8
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 3.5e-98 362.5 326 60.1
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 7.9e-98 361.3 333 59.2
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.0e-97 360.9 335 58.5
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.8e-97 360.1 338 58.3
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 5.1e-97 358.6 340 57.6
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 8.7e-97 357.8 333 58.9
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 8.7e-97 357.8 332 59.6
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 1.5e-96 357.1 333 59.2
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.3e-95 354.0 332 58.4
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.3e-95 354.0 333 58.3
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 6.2e-95 351.7 322 56.8
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 8.2e-95 351.3 332 57.5
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.1e-94 350.9 322 56.5
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.4e-94 350.5 328 56.1
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.8e-94 350.1 338 58.0
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 4.0e-94 349.0 332 58.4
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.6e-93 346.3 322 56.5
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 5.8e-93 345.1 334 57.8
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.0e-92 344.4 338 57.4
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 6.5e-92 341.7 339 57.5
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 6.5e-92 341.7 322 57.8
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.1e-91 340.9 338 58.6
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 1.1e-91 340.9 359 54.9
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.9e-91 340.1 332 57.8
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.9e-91 340.1 322 55.9
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 7.1e-91 338.2 332 56.9
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 7.1e-91 338.2 332 57.5
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.3e-91 337.8 338 56.5
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 9.3e-91 337.8 334 56.0
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 1.2e-90 337.4 338 57.1
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.6e-90 337.0 339 56.3
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.7e-90 336.3 332 57.5
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 6.1e-90 335.1 337 57.0
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 7.9e-90 334.7 340 56.8
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 7.9e-90 334.7 337 54.0
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.3e-89 334.0 341 54.0
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 2.3e-89 333.2 277 62.8
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.9e-89 332.4 332 56.6
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.1e-89 332.0 341 53.7
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 5.1e-89 332.0 336 55.4
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.1e-88 330.9 341 53.4
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.3e-88 328.9 278 62.6
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 5.7e-88 328.6 334 55.4
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 7.4e-88 328.2 277 61.4
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 9.7e-88 327.8 337 53.7
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.8e-87 325.5 332 55.7
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 8.2e-87 324.7 337 55.8
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.1e-86 324.3 364 51.4
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 4.5e-85 318.9 330 53.6
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 1.3e-84 317.4 247 70.4
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 3.8e-84 315.8 332 54.5
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 3.8e-84 315.8 345 52.5
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 7.2e-83 311.6 331 53.5
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 2.7e-82 309.7 332 53.3
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 3.6e-82 309.3 304 55.6
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 3.6e-82 309.3 350 52.6
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 3.0e-81 306.2 327 53.8
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 5.1e-81 305.4 329 52.6
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 8.8e-81 304.7 342 50.9
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 5.7e-80 302.0 322 55.9
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.7e-79 300.4 342 51.8
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.7e-79 300.4 326 50.6
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 3.7e-79 299.3 338 52.1
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 3.7e-79 299.3 338 52.1
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 3.7e-79 299.3 338 52.1
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 6.3e-79 298.5 336 50.9
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 8.2e-79 298.1 322 55.9
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.1e-78 297.7 330 49.1
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 4.1e-78 295.8 335 50.7
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.2e-77 294.3 273 53.8
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 5.9e-77 292.0 332 53.3
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 7.7e-77 291.6 334 52.7
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 3.8e-76 289.3 339 49.3
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 6.5e-76 288.5 383 46.5
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 8.5e-76 288.1 334 50.9
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.4e-75 287.3 329 50.8
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.2e-75 286.2 248 62.5
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 4.2e-75 285.8 333 51.1
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 2.7e-74 283.1 338 49.7
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 2.7e-74 283.1 338 49.7
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 3.0e-73 279.6 238 59.2
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 8.8e-73 278.1 219 63.0
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 2.0e-72 276.9 334 48.2
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 3.7e-71 272.7 336 48.5
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 5.3e-70 268.9 334 47.3
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 1.0e-68 264.6 339 47.5
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.3e-68 264.2 329 49.2
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 8.5e-68 261.5 339 47.2
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.9e-67 260.4 339 47.2
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.2e-67 259.6 333 48.0
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.1e-66 256.9 315 48.9
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 8.8e-65 251.5 368 43.2
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 2.2e-63 246.9 329 46.2
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 6.3e-63 245.4 337 44.5
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 5.0e-60 235.7 316 47.5
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 6.5e-60 235.3 298 46.6
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 3.4e-56 223.0 231 55.0
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 4.4e-56 222.6 319 44.8
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.2e-55 220.3 310 47.1
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.7e-53 213.4 208 58.7
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 5.9e-53 212.2 160 65.0
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.2e-50 204.5 164 58.5
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.1e-50 202.2 329 43.2
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 8.8e-49 198.4 164 61.0
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.0e-48 197.2 333 42.6
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 3.4e-48 196.4 336 40.5
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.7e-47 194.1 256 44.5
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 6.3e-47 192.2 204 58.8
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.1e-46 191.4 204 58.3
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.2e-45 188.0 204 57.8
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.3e-44 184.5 234 47.9
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.5e-43 181.0 338 38.5
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.9e-41 171.8 171 60.8
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.7e-40 169.1 145 53.8
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 4.9e-39 166.0 173 58.4
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.3e-36 157.1 126 56.3
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.2e-34 151.4 133 51.9
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.6e-32 143.7 210 49.0
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.6e-32 143.7 146 58.9
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 2.2e-31 140.6 209 45.0
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 4.1e-30 136.3 121 57.0
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 9.5e-27 125.2 140 54.3
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 6.2e-26 122.5 139 50.4
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.7e-23 114.4 101 48.5
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.7e-23 113.2 133 54.9
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 2.1e-18 97.4 220 33.2
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 2.3e-17 94.0 97 47.4
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.9e-15 87.0 303 29.7
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 9.2e-14 82.0 88 46.6
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 5.1e-12 76.3 239 29.7
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 6.2e-10 69.3 77 51.9
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 8.9e-09 65.5 55 52.7
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 1.4e-06 58.2 52 51.9


User provided reference genes

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