Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 6.5e-224 780.4 394 100.0
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 2.0e-217 758.8 394 97.2
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 3.2e-215 751.5 394 96.2
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 1.5e-199 699.5 394 87.6
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 1.5e-196 689.5 391 88.5
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 8.6e-192 673.7 394 85.0
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 9.5e-191 670.2 377 89.1
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 4.6e-145 518.5 396 69.4
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 7.6e-140 501.1 399 68.7
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 2.4e-133 479.6 396 66.4
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.3e-131 473.8 404 64.6
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 3.8e-131 472.2 389 66.3
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.7e-129 466.1 404 63.6
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 3.9e-128 462.2 396 63.1
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 5.1e-128 461.8 396 63.4
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 5.7e-127 458.4 387 65.9
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.4e-125 453.8 385 64.4
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 1.8e-125 453.4 396 62.1
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 2.4e-125 453.0 396 62.4
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 2.0e-124 449.9 392 64.5
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 4.5e-124 448.7 386 62.7
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 1.0e-123 447.6 387 62.3
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 1.0e-123 447.6 397 62.0
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 2.9e-123 446.0 396 61.9
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 3.8e-123 445.7 395 61.8
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 4.2e-122 442.2 394 61.9
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 5.5e-122 441.8 394 60.7
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 4.6e-121 438.7 385 63.6
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 6.1e-121 438.3 396 62.9
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 1.1e-119 434.1 392 61.0
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 1.5e-119 433.7 399 60.4
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.5e-119 433.7 395 61.5
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 4.3e-119 432.2 389 60.7
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 7.4e-119 431.4 391 61.9
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 9.7e-119 431.0 390 62.8
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.2e-118 429.9 394 61.7
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 2.2e-118 429.9 389 59.1
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 2.2e-118 429.9 390 61.0
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 2.8e-118 429.5 390 61.3
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 8.2e-118 427.9 388 60.6
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 1.1e-117 427.6 396 59.6
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.1e-117 426.0 394 61.7
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 6.9e-117 424.9 388 61.3
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 6.9e-117 424.9 394 60.4
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 9.1e-117 424.5 396 60.9
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.0e-116 423.3 390 61.3
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 4.5e-116 422.2 395 60.8
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 4.5e-116 422.2 396 59.1
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 5.9e-116 421.8 386 60.4
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 1.3e-115 420.6 388 61.1
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 1.7e-115 420.2 390 60.8
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 5.0e-115 418.7 390 60.5
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 8.5e-115 417.9 387 58.9
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 1.4e-114 417.2 384 60.2
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 5.5e-114 415.2 390 59.0
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.2e-113 414.1 384 61.2
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.7e-113 412.9 384 60.7
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.7e-113 412.9 384 60.7
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 6.1e-113 411.8 384 61.2
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 6.1e-113 411.8 404 58.2
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 7.9e-113 411.4 381 59.8
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 3.0e-112 409.5 395 57.0
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 3.9e-112 409.1 385 60.3
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 3.9e-112 409.1 387 59.2
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 8.8e-112 407.9 403 57.8
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 8.8e-112 407.9 394 58.4
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 3.3e-111 406.0 393 59.5
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 5.7e-111 405.2 387 57.9
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 1.1e-109 401.0 401 59.1
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 3.1e-109 399.4 347 62.8
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 2.6e-108 396.4 363 62.0
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 2.6e-108 396.4 402 58.2
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 5.9e-108 395.2 389 55.8
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 1.3e-107 394.0 377 59.7
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 6.5e-107 391.7 377 59.4
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.4e-104 384.0 363 59.5
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 6.7e-104 381.7 402 56.2
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 2.6e-103 379.8 388 55.7
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 1.8e-101 373.6 389 55.0
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 9.1e-101 371.3 385 56.4
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 2.6e-100 369.8 386 55.2
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 5.9e-100 368.6 386 55.2
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 1.7e-99 367.1 389 53.0
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 2.9e-99 366.3 387 54.0
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 6.5e-99 365.2 386 54.4
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 6.5e-99 365.2 387 53.7
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 8.5e-99 364.8 386 54.9
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 1.1e-98 364.4 387 53.7
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 2.5e-98 363.2 387 53.5
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 3.2e-98 362.8 386 54.1
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 4.2e-98 362.5 408 53.7
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 5.5e-98 362.1 387 53.5
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 7.2e-98 361.7 387 53.2
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 9.4e-98 361.3 386 53.6
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 9.4e-98 361.3 384 56.0
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 6.1e-97 358.6 387 54.5
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 1.0e-96 357.8 389 52.2
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 1.0e-96 357.8 386 53.4
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 4.0e-96 355.9 386 54.1
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 1.2e-95 354.4 402 52.2
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 7.5e-95 351.7 386 54.1
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 7.5e-95 351.7 387 52.5
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 3.1e-93 346.3 340 60.3
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 9.1e-93 344.7 388 53.9
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 7.7e-92 341.7 385 51.4
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 8.5e-91 338.2 354 53.1
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 5.5e-90 335.5 365 53.2
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 1.2e-89 334.3 364 55.8
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 1.2e-89 334.3 364 55.8
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 6.1e-89 332.0 287 64.8
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 6.1e-89 332.0 343 53.1
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.7e-83 313.9 341 51.0
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 2.1e-81 307.0 323 52.0
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.3e-80 303.5 294 58.8
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 1.4e-77 294.3 332 50.6
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 2.7e-76 290.0 297 54.9
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.1e-69 268.1 252 55.6
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 3.2e-69 266.5 169 77.5
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 7.0e-69 265.4 389 41.9
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 7.5e-63 245.4 301 51.8
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.7e-62 244.2 301 51.5
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 7.1e-53 212.2 230 53.5
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 6.6e-51 205.7 196 60.2
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 4.0e-48 196.4 218 56.4
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 7.1e-45 185.7 371 40.2
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 2.4e-40 170.6 225 42.2
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 1.8e-32 144.4 188 42.0
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 2.2e-30 137.5 134 53.0
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 3.8e-30 136.7 185 47.6
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.1e-29 135.2 145 57.9
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 1.4e-29 134.8 87 74.7
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 3.0e-27 127.1 171 50.3
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 5.8e-23 112.8 85 64.7
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 8.7e-19 99.0 119 46.2
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 2.0e-15 87.8 66 62.1
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 1.6e-12 78.2 249 28.1
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 8.7e-11 72.4 57 57.9
unitig_0.g2818 Utricularia gibba HOM05D002170 ORTHO05D005003 6.3e-09 66.2 81 44.4
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 8.2e-09 65.9 46 71.7
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 4.1e-08 63.5 76 50.0
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 4.1e-08 63.5 170 28.2
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 9.0e-08 62.4 75 53.3
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 3.4e-07 60.5 260 24.2
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 7.7e-07 59.3 293 27.0
Gorai.011G083100 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.7e-06 58.2 64 51.6


User provided reference genes

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