Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 2.6e-203 711.8 361 100.0
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 1.3e-162 576.6 437 72.8
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 1.9e-161 572.8 439 72.4
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 3.2e-153 545.4 428 69.2
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 3.1e-132 475.7 488 57.8
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 9.4e-129 464.2 437 60.0
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 1.5e-126 456.8 437 57.4
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 1.5e-126 456.8 447 58.8
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 3.4e-126 455.7 444 57.4
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 1.7e-125 453.4 416 60.8
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 2.4e-124 449.5 431 57.8
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 2.7e-123 446.0 445 57.5
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 7.7e-123 444.5 444 57.2
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 1.0e-122 444.1 432 56.5
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 2.9e-122 442.6 443 56.9
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 2.9e-122 442.6 444 55.2
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 3.8e-122 442.2 441 56.9
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.9e-121 439.9 417 58.0
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 7.3e-121 438.0 417 58.0
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 1.2e-120 437.2 431 56.1
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.6e-120 436.8 429 57.1
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 2.1e-120 436.4 459 54.2
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 8.0e-120 434.5 442 55.2
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 2.3e-119 433.0 430 55.6
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 4.0e-119 432.2 426 56.8
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 5.2e-119 431.8 420 56.7
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 1.2e-118 430.6 433 55.9
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 1.5e-118 430.3 433 55.9
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 2.6e-118 429.5 430 56.3
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 4.4e-118 428.7 436 54.8
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 5.7e-118 428.3 430 54.9
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 7.5e-118 427.9 444 55.2
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 8.3e-117 424.5 446 54.0
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 1.1e-116 424.1 453 52.8
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 1.4e-116 423.7 444 54.3
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 1.8e-116 423.3 444 54.3
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 1.8e-116 423.3 435 54.5
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 5.4e-116 421.8 443 53.3
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 7.0e-116 421.4 430 54.7
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 9.2e-116 421.0 434 53.9
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.2e-115 420.6 443 52.8
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.2e-115 420.6 443 52.8
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 1.2e-115 420.6 430 54.0
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 1.2e-115 420.6 441 53.7
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 3.5e-115 419.1 439 53.5
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 7.8e-115 417.9 444 53.2
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 2.3e-114 416.4 463 54.2
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 5.0e-114 415.2 439 53.3
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 6.6e-114 414.8 362 66.0
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 9.5e-113 411.0 447 52.6
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 3.1e-111 406.0 431 52.9
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 4.0e-111 405.6 429 53.1
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 5.2e-111 405.2 390 59.0
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 8.9e-111 404.4 468 49.8
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 8.9e-111 404.4 437 52.6
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 1.2e-110 404.1 442 51.6
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 2.0e-110 403.3 444 51.4
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 2.0e-110 403.3 445 51.7
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 2.0e-110 403.3 444 52.3
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 2.6e-110 402.9 439 51.7
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 5.8e-110 401.7 445 52.8
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 5.8e-110 401.7 445 51.9
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 7.5e-110 401.4 444 51.4
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 9.8e-110 401.0 412 53.9
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 2.2e-109 399.8 446 52.0
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 3.7e-109 399.1 445 51.5
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 3.7e-109 399.1 407 55.5
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 8.3e-109 397.9 441 51.7
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 3.2e-108 396.0 425 52.2
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 3.2e-108 396.0 434 51.8
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 5.4e-108 395.2 392 55.1
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 1.6e-107 393.7 445 51.9
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 1.6e-107 393.7 445 51.9
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 1.6e-107 393.7 536 43.8
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 4.6e-107 392.1 448 51.8
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 1.0e-106 391.0 441 51.2
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 8.6e-106 387.9 441 50.8
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 1.9e-105 386.7 412 53.4
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 4.3e-105 385.6 451 51.0
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 5.6e-105 385.2 423 51.8
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 2.2e-101 373.2 417 52.0
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.4e-100 369.8 365 56.7
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 2.1e-99 366.7 434 51.2
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 3.3e-97 359.4 445 49.0
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 1.6e-96 357.1 449 46.3
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 8.9e-95 351.3 391 52.4
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 1.3e-93 347.4 453 45.5
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.1e-92 344.4 337 56.1
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 1.7e-90 337.0 288 63.2
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 3.3e-89 332.8 435 46.4
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.8e-87 327.0 369 50.9
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 4.0e-87 325.9 450 43.6
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 5.2e-87 325.5 348 55.5
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 8.9e-87 324.7 412 47.3
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 2.4e-84 316.6 370 50.5
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 9.0e-79 298.1 432 43.8
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 4.5e-78 295.8 332 50.0
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 9.9e-78 294.7 321 50.2
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 1.1e-76 291.2 356 49.4
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 2.5e-73 280.0 445 42.5
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 1.3e-69 267.7 389 45.5
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 2.4e-68 263.5 320 49.4
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 3.2e-68 263.1 446 37.4
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 1.6e-67 260.8 437 37.8
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 1.1e-65 254.6 422 38.9
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 6.2e-64 248.8 190 71.1
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 4.9e-61 239.2 143 79.7
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 8.4e-61 238.4 192 63.5
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 1.4e-60 237.7 309 49.2
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 5.3e-47 192.6 219 49.8
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 1.5e-46 191.0 220 51.4
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 5.0e-45 186.0 345 37.1
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 8.5e-45 185.3 300 39.3
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 7.9e-43 178.7 152 61.8
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 1.4e-42 177.9 396 36.6
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 1.8e-42 177.6 148 56.1
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.2e-38 164.9 176 53.4
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 2.9e-37 160.2 360 35.3
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 1.4e-31 141.4 163 49.7
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 7.7e-30 135.6 154 51.3
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.3e-26 124.0 67 86.6
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 2.0e-22 110.9 179 40.2
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 1.1e-20 105.1 69 72.5
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 6.8e-18 95.9 72 69.4
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-16 91.7 92 52.2
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 3.1e-15 87.0 159 37.7
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 2.0e-14 84.3 63 65.1
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 4.0e-10 70.1 114 42.1
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 5.2e-10 69.7 105 41.0
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 1.2e-09 68.6 60 53.3


User provided reference genes

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