Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.3e-83 311.2 150 100.0
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 3.0e-81 305.1 148 98.6
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 3.4e-80 301.6 150 98.0
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.1e-75 286.6 148 89.2
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.6e-74 282.7 148 87.8
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 1.6e-74 282.7 148 87.8
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 4.7e-74 281.2 149 88.6
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.2e-74 280.8 150 89.3
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 3.1e-73 278.5 150 88.7
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.2e-72 276.6 150 88.0
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.3e-71 273.1 145 86.2
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.9e-71 271.9 148 85.1
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 6.4e-71 270.8 149 84.6
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 1.9e-67 259.2 149 78.5
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 5.6e-67 257.7 143 81.1
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 2.8e-66 255.4 146 80.1
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 5.2e-65 251.1 146 77.4
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 9.9e-64 246.9 149 74.5
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 5.4e-62 241.1 147 74.1
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.6e-61 239.6 147 73.5
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.7e-61 238.8 146 73.3
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.5e-61 238.4 150 73.3
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 3.5e-61 238.4 148 73.0
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 4.6e-61 238.0 145 74.5
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.0e-60 236.9 147 72.1
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 3.9e-60 235.0 145 74.5
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 8.6e-60 233.8 151 73.5
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 8.6e-60 233.8 137 77.4
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 2.5e-59 232.3 137 75.2
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 3.3e-59 231.9 149 71.1
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 4.3e-59 231.5 137 74.5
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 9.5e-59 230.3 147 69.4
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 9.5e-59 230.3 136 72.1
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 2.8e-58 228.8 144 70.8
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 8.1e-58 227.3 136 71.3
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.1e-57 226.9 149 65.1
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.4e-57 226.5 145 71.0
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.8e-57 226.1 146 68.5
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 6.8e-57 224.2 148 68.2
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 2.0e-56 222.6 146 69.2
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 2.0e-56 222.6 144 70.8
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 2.0e-56 222.6 140 70.7
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 3.4e-56 221.9 143 67.1
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 4.4e-56 221.5 146 71.2
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 5.8e-56 221.1 143 72.0
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 7.6e-56 220.7 146 67.8
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 1.7e-55 219.5 146 67.1
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 2.2e-55 219.2 140 69.3
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 1.1e-54 216.9 134 73.9
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 2.4e-54 215.7 147 66.0
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 3.2e-54 215.3 132 73.5
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 4.1e-54 214.9 143 67.8
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 4.1e-54 214.9 144 69.4
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 5.4e-54 214.5 147 67.3
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 9.2e-54 213.8 141 70.9
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 9.2e-54 213.8 141 70.9
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.2e-53 213.4 137 71.5
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.2e-53 213.4 148 65.5
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.6e-53 213.0 133 74.4
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.6e-53 213.0 134 70.1
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 2.1e-53 212.6 137 68.6
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.7e-53 212.2 141 68.1
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 2.7e-53 212.2 141 68.1
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 6.0e-53 211.1 133 75.9
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 7.8e-53 210.7 134 73.1
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 1.3e-52 209.9 137 70.1
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.3e-52 209.9 141 67.4
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 2.3e-52 209.1 149 65.8
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 2.3e-52 209.1 143 71.3
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 3.0e-52 208.8 132 70.5
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 3.0e-52 208.8 144 67.4
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.9e-52 208.4 138 68.1
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 6.6e-52 207.6 137 70.8
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 6.6e-52 207.6 133 68.4
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 8.6e-52 207.2 143 65.0
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.1e-51 206.8 134 70.1
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.1e-51 206.8 138 66.7
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.1e-51 206.8 134 71.6
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 2.5e-51 205.7 134 70.9
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.5e-51 205.7 130 73.1
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 3.3e-51 205.3 130 73.1
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 5.6e-51 204.5 212 50.9
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 7.3e-51 204.1 128 75.0
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 7.3e-51 204.1 128 75.0
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 7.3e-51 204.1 128 75.0
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 7.3e-51 204.1 148 64.9
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.6e-51 203.8 133 70.7
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 1.2e-50 203.4 138 69.6
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-50 203.4 138 69.6
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 1.2e-50 203.4 138 69.6
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.6e-50 203.0 133 70.7
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.1e-50 202.6 135 68.9
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.1e-50 202.6 135 68.9
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 2.8e-50 202.2 154 62.3
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 3.6e-50 201.8 129 71.3
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.7e-50 201.4 133 69.9
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 4.7e-50 201.4 144 65.3
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.1e-49 200.3 150 62.7
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.4e-49 199.9 121 73.6
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 3.4e-48 195.3 142 59.2
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 4.4e-48 194.9 147 61.9
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 5.8e-48 194.5 131 65.6
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 5.8e-48 194.5 142 59.2
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 5.8e-48 194.5 121 73.6
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 3.8e-47 191.8 131 69.5
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.1e-46 190.3 131 64.9
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 5.4e-46 188.0 141 61.7
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 1.6e-45 186.4 126 62.7
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.6e-45 186.4 150 58.0
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 3.5e-45 185.3 128 65.6
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 9.6e-43 177.2 122 63.1
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.6e-42 176.4 121 65.3
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 2.6e-40 169.1 217 43.3
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 4.5e-40 168.3 126 64.3
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 2.9e-39 165.6 112 67.0
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 1.0e-36 157.1 135 56.3
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 2.8e-34 149.1 134 49.3
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 3.7e-34 148.7 135 48.9
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 3.1e-33 145.6 129 54.3
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 4.0e-33 145.2 136 47.1
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 7.6e-32 141.0 147 51.7
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 3.8e-31 138.7 102 64.7
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 1.4e-30 136.7 80 76.2
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 9.3e-30 134.0 137 44.5
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-29 132.9 122 50.8
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 2.7e-29 132.5 122 50.8
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 7.9e-29 131.0 122 50.0
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 6.7e-28 127.9 82 70.7
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 2.5e-27 125.9 97 59.8
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 9.6e-27 124.0 84 67.9
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 4.0e-25 118.6 106 49.1
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 2.2e-23 112.8 132 43.2
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 2.2e-23 112.8 163 38.0
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.8e-23 112.1 136 40.4
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 8.4e-23 110.9 95 50.5
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.6e-21 106.7 134 39.6
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 1.9e-19 99.8 89 57.3
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 8.2e-18 94.4 74 62.2
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 2.6e-16 89.4 146 30.8
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 4.5e-16 88.6 60 63.3
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 5.9e-16 88.2 60 63.3
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 6.5e-15 84.7 131 31.3
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 2.7e-13 79.3 72 50.0
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 1.3e-10 70.5 106 34.9
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 5.0e-07 58.5 38 63.2
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 1.4e-06 57.0 37 70.3


User provided reference genes

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