Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 1.7e-78 295.8 137 100.0
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 9.3e-77 290.0 137 97.8
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 4.6e-76 287.7 137 97.1
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 3.3e-74 281.6 137 94.2
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 1.2e-68 263.1 133 91.7
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 7.4e-66 253.8 136 85.3
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 1.4e-61 239.6 124 85.5
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 3.2e-61 238.4 131 84.7
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 4.2e-61 238.0 126 84.9
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 5.5e-61 237.7 122 87.7
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 1.2e-60 236.5 130 83.8
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.2e-60 236.5 134 79.9
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.1e-60 235.7 136 77.9
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 2.1e-60 235.7 121 88.4
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 2.7e-60 235.3 127 83.5
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.7e-60 235.3 132 81.8
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 4.6e-60 234.6 121 87.6
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 6.0e-60 234.2 124 84.7
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 6.0e-60 234.2 123 85.4
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.0e-59 233.4 128 84.4
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 1.0e-59 233.4 129 82.2
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 1.8e-59 232.6 122 84.4
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.8e-59 232.6 130 81.5
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 2.3e-59 232.3 130 81.5
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 2.3e-59 232.3 125 82.4
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.3e-59 232.3 121 85.1
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 3.0e-59 231.9 133 81.2
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.9e-59 231.5 120 85.0
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 3.9e-59 231.5 120 85.0
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 3.9e-59 231.5 126 83.3
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 5.1e-59 231.1 119 84.9
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 6.7e-59 230.7 123 83.7
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 8.7e-59 230.3 120 85.8
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 8.7e-59 230.3 128 82.8
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 1.1e-58 229.9 128 82.8
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 1.1e-58 229.9 123 82.1
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.1e-58 229.9 134 79.9
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 1.5e-58 229.6 132 78.0
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 1.9e-58 229.2 122 82.8
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 1.9e-58 229.2 123 82.1
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 2.5e-58 228.8 121 83.5
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 2.5e-58 228.8 121 83.5
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 3.3e-58 228.4 123 81.3
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.6e-58 227.6 123 80.5
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 5.6e-58 227.6 119 85.7
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 5.6e-58 227.6 119 85.7
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 7.4e-58 227.3 120 84.2
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 7.4e-58 227.3 130 77.7
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 7.4e-58 227.3 121 82.6
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 9.6e-58 226.9 123 81.3
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 9.6e-58 226.9 123 81.3
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 9.6e-58 226.9 126 81.0
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 1.3e-57 226.5 129 80.6
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.6e-57 226.1 129 78.3
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 2.8e-57 225.3 131 78.6
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.8e-57 225.3 119 84.9
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 2.8e-57 225.3 119 84.9
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 2.8e-57 225.3 130 79.2
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.7e-57 224.9 123 80.5
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 3.7e-57 224.9 123 80.5
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 3.7e-57 224.9 123 79.7
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 3.7e-57 224.9 121 81.0
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 4.8e-57 224.6 127 78.7
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 8.2e-57 223.8 142 75.4
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 8.2e-57 223.8 119 82.4
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 1.1e-56 223.4 121 81.8
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 1.1e-56 223.4 120 82.5
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 1.4e-56 223.0 129 76.0
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 1.8e-56 222.6 123 80.5
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 2.4e-56 222.2 133 74.4
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 2.4e-56 222.2 127 78.0
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 2.4e-56 222.2 129 76.0
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 3.1e-56 221.9 133 75.2
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 4.0e-56 221.5 120 81.7
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 1.5e-55 219.5 133 73.7
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 2.0e-55 219.2 121 78.5
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 4.5e-55 218.0 119 80.7
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 6.5e-54 214.2 151 66.9
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 8.4e-54 213.8 188 56.9
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 1.1e-53 213.4 122 74.6
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.9e-53 212.6 144 68.1
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 3.2e-53 211.8 119 75.6
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 7.1e-53 210.7 146 68.5
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 9.3e-53 210.3 121 76.0
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 2.7e-52 208.8 126 71.4
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 2.7e-52 208.8 117 77.8
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 2.7e-52 208.8 117 77.8
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 5.1e-51 204.5 131 67.9
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 4.3e-50 201.4 198 54.5
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.4e-48 196.4 118 72.9
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 4.1e-48 194.9 113 78.8
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 4.1e-48 194.9 131 71.0
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 4.1e-48 194.9 114 73.7
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 4.5e-47 191.4 133 69.9
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 5.0e-46 188.0 124 64.5
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 5.5e-45 184.5 126 70.6
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 1.2e-44 183.3 129 69.0
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 6.1e-44 181.0 95 84.2
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 1.0e-43 180.3 129 65.1
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.1e-42 176.8 135 65.9
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 5.7e-42 174.5 125 56.0
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 5.7e-42 174.5 95 83.2
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 7.4e-42 174.1 92 83.7
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.7e-41 172.9 122 61.5
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 3.4e-39 165.2 113 58.4
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 3.4e-39 165.2 167 51.5
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 3.4e-39 165.2 93 78.5
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 1.3e-38 163.3 125 64.0
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 6.1e-36 154.5 78 84.6
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 4.8e-33 144.8 109 67.0
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 7.7e-31 137.5 102 55.9
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 6.5e-30 134.4 90 73.3
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 4.2e-29 131.7 106 50.9
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 8.0e-28 127.5 63 88.9
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 5.7e-26 121.3 65 84.6
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 7.4e-26 120.9 64 84.4
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 9.7e-26 120.6 92 63.0
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 2.2e-25 119.4 83 69.9
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 4.8e-25 118.2 100 43.0
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 6.3e-25 117.9 106 47.2
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 1.4e-24 116.7 96 51.0
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 7.0e-24 114.4 191 39.3
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 1.6e-23 113.2 76 69.7
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.6e-23 113.2 126 46.0
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.6e-23 112.5 57 86.0
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 4.5e-23 111.7 56 83.9
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.8e-22 108.6 95 47.4
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 5.2e-19 98.2 104 44.2
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 1.2e-18 97.1 99 37.4
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 1.5e-13 80.1 74 47.3
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 3.2e-13 79.0 51 72.5
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 1.0e-11 73.9 52 69.2
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 2.3e-11 72.8 50 70.0
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 4.0e-11 72.0 47 61.7
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 5.7e-10 68.2 44 63.6
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.3e-09 67.0 116 36.2
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.2e-09 66.2 36 72.2
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 2.2e-09 66.2 36 72.2
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 2.3e-06 56.2 28 82.1
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 6.6e-06 54.7 109 36.7
BolC6t35595H Brassica oleracea HOM05D040450 ORTHO05D033487 6.6e-06 54.7 26 84.6


User provided reference genes

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