Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.4e-75 286.2 145 100.0
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 3.5e-66 255.0 154 86.4
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 1.9e-64 249.2 153 85.0
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 4.4e-53 211.5 155 72.3
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 7.6e-53 210.7 153 72.5
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.3e-44 183.3 155 68.4
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 3.3e-40 168.7 155 61.3
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 9.6e-40 167.2 152 62.5
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 8.1e-39 164.1 152 59.9
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 5.3e-38 161.4 148 59.5
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 7.6e-37 157.5 137 59.9
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 8.4e-36 154.1 150 55.3
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 5.4e-35 151.4 145 56.6
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 3.5e-34 148.7 145 54.5
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 3.5e-34 148.7 143 55.9
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 1.8e-33 146.4 145 55.2
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 3.0e-33 145.6 148 52.7
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 3.9e-33 145.2 144 54.2
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 6.7e-33 144.4 144 52.8
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 1.9e-32 142.9 144 54.9
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 2.5e-32 142.5 150 54.0
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 3.3e-32 142.1 152 54.6
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 3.3e-32 142.1 148 56.8
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 4.3e-32 141.7 152 54.6
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 7.4e-32 141.0 146 53.4
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 9.6e-32 140.6 147 57.1
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 3.7e-31 138.7 144 55.6
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 6.2e-31 137.9 154 53.2
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 8.1e-31 137.5 149 55.0
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 1.1e-30 137.1 148 52.0
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 1.1e-30 137.1 145 57.9
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 1.4e-30 136.7 131 56.5
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 4.0e-30 135.2 146 52.1
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 5.3e-30 134.8 144 53.5
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 5.3e-30 134.8 140 52.1
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 5.3e-30 134.8 156 52.6
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 5.3e-30 134.8 147 53.7
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.2e-29 133.7 132 56.8
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 2.6e-29 132.5 136 52.2
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 3.4e-29 132.1 140 52.1
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 3.4e-29 132.1 108 60.2
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 7.6e-29 131.0 148 50.7
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 7.6e-29 131.0 140 52.9
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 4.9e-28 128.3 147 51.7
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 4.9e-28 128.3 136 52.9
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 1.9e-27 126.3 148 54.1
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 3.2e-27 125.6 144 51.4
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 3.2e-27 125.6 150 49.3
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 4.2e-27 125.2 141 46.1
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 7.1e-27 124.4 146 49.3
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 1.2e-26 123.6 102 60.8
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.6e-26 123.2 145 49.7
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.6e-26 123.2 145 49.7
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 1.6e-26 123.2 145 49.0
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 2.7e-26 122.5 149 50.3
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 2.7e-26 122.5 154 47.4
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 2.3e-25 119.4 119 53.8
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 3.0e-25 119.0 142 50.0
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 3.0e-25 119.0 135 51.1
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 3.9e-25 118.6 143 49.7
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 3.9e-25 118.6 109 58.7
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 5.1e-25 118.2 144 49.3
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 5.1e-25 118.2 143 52.4
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 5.1e-25 118.2 150 47.3
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 1.5e-24 116.7 132 45.5
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 2.5e-24 115.9 146 48.6
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 2.5e-24 115.9 143 49.0
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 2.5e-24 115.9 143 49.0
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 2.5e-24 115.9 146 50.0
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 4.3e-24 115.2 144 49.3
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 4.3e-24 115.2 146 42.5
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 5.6e-24 114.8 145 49.0
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 7.4e-24 114.4 142 50.0
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 9.6e-24 114.0 146 46.6
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 1.3e-23 113.6 106 61.3
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 1.6e-23 113.2 132 49.2
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.1e-23 112.8 146 45.9
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 2.8e-23 112.5 147 46.9
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 2.8e-23 112.5 137 45.3
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 3.7e-23 112.1 139 51.8
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 4.8e-23 111.7 150 48.0
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 6.2e-23 111.3 146 45.2
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 1.8e-22 109.8 147 46.3
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 1.8e-22 109.8 119 49.6
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 1.8e-22 109.8 150 47.3
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.8e-22 109.8 144 45.8
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 4.0e-22 108.6 142 47.2
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 5.3e-22 108.2 146 44.5
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 6.9e-22 107.8 117 52.1
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.2e-21 107.1 144 45.1
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 1.5e-21 106.7 146 45.2
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 4.5e-21 105.1 115 49.6
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 1.7e-20 103.2 84 61.9
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 2.9e-20 102.4 146 44.5
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 3.8e-20 102.1 118 46.6
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 4.9e-20 101.7 146 44.5
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 6.5e-20 101.3 153 41.8
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 1.1e-19 100.5 135 49.6
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 3.2e-19 99.0 117 45.3
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 7.1e-19 97.8 119 50.4
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 1.6e-18 96.7 148 43.2
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 1.0e-17 94.0 151 42.4
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 1.1e-16 90.5 141 44.7
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 1.9e-16 89.7 128 45.3
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 4.3e-16 88.6 140 44.3
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 2.2e-15 86.3 133 47.4
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 3.7e-15 85.5 137 40.9
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 2.0e-13 79.7 128 39.1
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.0e-12 77.4 151 41.7
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.0e-12 77.4 151 41.7
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 1.4e-11 73.6 97 43.3
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 4.2e-11 72.0 137 43.1
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 2.7e-10 69.3 79 58.2
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 2.0e-08 63.2 104 40.4
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 2.5e-08 62.8 130 40.0
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 2.5e-08 62.8 72 48.6
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 3.3e-08 62.4 70 45.7
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 4.3e-08 62.0 104 40.4
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 4.3e-08 62.0 77 50.6
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 4.3e-08 62.0 77 50.6
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 1.3e-07 60.5 104 39.4
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 1.3e-07 60.5 104 39.4
Mapoly0058s0037 Marchantia polymorpha HOM05D006043 ORTHO05D007309 4.8e-07 58.5 97 41.2
Pp3c23_8320 Physcomitrium patens HOM05D053615 ORTHO05D007309 2.4e-06 56.2 88 43.2
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 2.4e-06 56.2 102 38.2


User provided reference genes

Program Settings