Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002679 Solanum tuberosum HOM05D000375 ORTHO05D000240 2.4e-84 315.5 162 100.0
Sopen09g003930 Solanum pennellii HOM05D000375 ORTHO05D000240 2.4e-76 288.9 162 90.1
Solyc09g009200.3 Solanum lycopersicum HOM05D000375 ORTHO05D000240 8.1e-72 273.9 162 86.4
Peaxi162Scf00068g00018 Petunia axillaris HOM05D000375 ORTHO05D000240 4.8e-56 221.5 170 72.4
CAN.G824.18 Capsicum annuum HOM05D000375 ORTHO05D000240 2.6e-54 215.7 159 74.2
Nitab4.5_0004686g0010 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.9e-52 209.5 164 70.1
Peaxi162Scf00163g00419 Petunia axillaris HOM05D000375 ORTHO05D000240 1.1e-49 200.3 171 66.1
Oeu039815.1 Olea europaea HOM05D000375 ORTHO05D000240 3.6e-43 178.7 169 63.9
Nitab4.5_0000963g0060 Nicotiana tabacum HOM05D000375 ORTHO05D000240 3.3e-41 172.2 162 64.2
Solyc10g083510.2 Solanum lycopersicum HOM05D000375 ORTHO05D000240 4.8e-40 168.3 169 61.5
CAN.G1039.19 Capsicum annuum HOM05D000375 ORTHO05D000240 6.3e-40 167.9 174 64.9
PGSC0003DMG400028259 Solanum tuberosum HOM05D000375 ORTHO05D000240 3.4e-38 162.2 172 60.5
Sopen10g032980 Solanum pennellii HOM05D000375 ORTHO05D000240 1.3e-37 160.2 169 60.9
Nitab4.5_0003541g0030 Nicotiana tabacum HOM05D000375 ORTHO05D000240 2.2e-37 159.5 131 71.0
Dinv21241 Davidia involucrata HOM05D000375 ORTHO05D000240 5.0e-37 158.3 166 59.6
Oeu040806.1 Olea europaea HOM05D000375 ORTHO05D000240 8.5e-37 157.5 159 61.0
QL07p040017 Quercus lobata HOM05D000375 ORTHO05D000240 7.2e-36 154.5 168 58.3
Thecc.05G083300 Theobroma cacao HOM05D000375 ORTHO05D000240 1.2e-35 153.7 163 59.5
CiPaw.09G009800 Carya illinoinensis HOM05D000375 ORTHO05D000240 2.7e-35 152.5 166 59.0
Haze_19561 Corylus avellana HOM05D000375 ORTHO05D000240 2.7e-35 152.5 178 55.1
Manes.08G022300 Manihot esculenta HOM05D000375 ORTHO05D000240 1.8e-34 149.8 161 58.4
Cfa016559 Carpinus fangiana HOM05D000375 ORTHO05D000240 3.9e-34 148.7 175 54.3
Duzib128G0614 Durio zibethinus HOM05D000375 ORTHO05D000240 5.1e-34 148.3 163 56.4
MSTRG.19238 Avicennia marina HOM05D000375 ORTHO05D000240 2.0e-33 146.4 172 54.7
Gohir.A09G137600 Gossypium hirsutum HOM05D000375 ORTHO05D000240 7.4e-33 144.4 163 57.7
CiPaw.10G006500 Carya illinoinensis HOM05D000375 ORTHO05D000240 1.3e-32 143.7 169 55.6
Manes.09G058720 Manihot esculenta HOM05D000375 ORTHO05D000240 8.2e-32 141.0 163 55.2
GSVIVG01033800001 Vitis vinifera HOM05D000375 ORTHO05D000240 8.2e-32 141.0 168 51.8
Actinidia34353 Actinidia chinensis HOM05D000375 ORTHO05D000240 1.1e-31 140.6 168 53.6
Eucgr.A01534 Eucalyptus grandis HOM05D000375 ORTHO05D000240 3.1e-31 139.0 182 50.5
Cc06_g05390 Coffea canephora HOM05D000375 ORTHO05D000240 4.1e-31 138.7 171 53.8
MSTRG.10355 Avicennia marina HOM05D000375 ORTHO05D000240 1.2e-30 137.1 143 60.8
Actinidia10395 Actinidia chinensis HOM05D000375 ORTHO05D000240 5.9e-30 134.8 166 53.6
Gohir.D09G137000 Gossypium hirsutum HOM05D000375 ORTHO05D000240 5.9e-30 134.8 163 55.8
CSS0041727 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 1.0e-29 134.0 177 54.2
Prupe.7G115500 Prunus persica HOM05D000375 ORTHO05D000240 2.9e-29 132.5 170 52.4
Gorai.006G157300 Gossypium raimondii HOM05D000375 ORTHO05D000240 3.8e-29 132.1 154 56.5
Nn2g14050 Nelumbo nucifera HOM05D000375 ORTHO05D000240 5.0e-29 131.7 178 51.1
vmacro08825 Vaccinium macrocarpon HOM05D000375 ORTHO05D000240 5.0e-29 131.7 159 54.7
CSS0013015 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 8.5e-29 131.0 141 56.0
Cpa.g.sc5.63 Carica papaya HOM05D000375 ORTHO05D000240 1.1e-28 130.6 166 53.0
TAR636G1689 Trochodendron aralioides HOM05D000375 ORTHO05D000240 1.1e-28 130.6 170 49.4
TWI53G1523 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 1.5e-28 130.2 165 53.9
Nitab4.5_0000132g0060 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.9e-28 129.8 144 57.6
Oeu032415.1 Olea europaea HOM05D000375 ORTHO05D000240 4.2e-28 128.6 136 55.1
RcHm_v2.0_Chr3g0472411 Rosa chinensis HOM05D000375 ORTHO05D000240 9.4e-28 127.5 172 52.3
Sed0026104 Sechium edule HOM05D000375 ORTHO05D000240 9.4e-28 127.5 170 48.2
Ciclev10011856m.g Citrus clementina HOM05D000375 ORTHO05D000240 1.2e-27 127.1 168 54.2
Lalb_Chr25g0288591 Lupinus albus HOM05D000375 ORTHO05D000240 1.6e-27 126.7 160 49.4
Nn6g35011 Nelumbo nucifera HOM05D000375 ORTHO05D000240 6.1e-27 124.8 152 54.6
Actinidia31283 Actinidia chinensis HOM05D000375 ORTHO05D000240 1.0e-26 124.0 157 51.0
Glyma.19G192700 Glycine max HOM05D000375 ORTHO05D000240 1.4e-26 123.6 170 47.6
ClCG10G019220 Citrullus lanatus HOM05D000375 ORTHO05D000240 1.8e-26 123.2 184 49.5
SalBow5G1012 Salvia bowleyana HOM05D000375 ORTHO05D000240 5.2e-26 121.7 165 49.7
VMungo1383G3570 Vigna mungo HOM05D000375 ORTHO05D000240 6.7e-26 121.3 175 45.7
ECA233G0476 Erigeron canadensis HOM05D000375 ORTHO05D000240 2.0e-25 119.8 183 49.7
Aqoxy2G01355 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 2.6e-25 119.4 169 50.3
Migut.L01765 Erythranthe guttata HOM05D000375 ORTHO05D000240 2.6e-25 119.4 174 45.4
Sed0002035 Sechium edule HOM05D000375 ORTHO05D000240 9.7e-25 117.5 164 50.0
Atru.chr8.1613 Acer truncatum HOM05D000375 ORTHO05D000240 1.3e-24 117.1 172 50.6
Gorai.009G406500 Gossypium raimondii HOM05D000375 ORTHO05D000240 3.7e-24 115.5 132 56.1
Lj1g0022211 Lotus japonicus HOM05D000375 ORTHO05D000240 3.7e-24 115.5 180 45.0
MD12G1020500 Malus domestica HOM05D000375 ORTHO05D000240 4.8e-24 115.2 170 50.0
Hma1.2p1_0084F.1_g043380 Hydrangea macrophylla HOM05D000375 ORTHO05D000240 1.8e-23 113.2 171 47.4
Rhsim04G0134400 Rhododendron simsii HOM05D000375 ORTHO05D000240 2.4e-23 112.8 156 50.6
SGA_v2.0_scaffold184G39943 Striga asiatica HOM05D000375 ORTHO05D000240 3.1e-23 112.5 186 44.6
Ca_08973_v3 Cicer arietinum L. HOM05D000375 ORTHO05D000240 4.1e-23 112.1 165 49.1
PGR004G0222 Punica granatum HOM05D000375 ORTHO05D000240 4.1e-23 112.1 177 45.8
PSO384G2858 Papaver somniferum HOM05D000375 ORTHO05D000240 5.3e-23 111.7 163 49.1
FAN09G3221 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.2e-22 110.5 158 48.7
PSO443G0062 Papaver somniferum HOM05D000375 ORTHO05D000240 2.0e-22 109.8 172 50.0
SGA_v2.0_scaffold13G06773 Striga asiatica HOM05D000375 ORTHO05D000240 2.0e-22 109.8 161 48.4
FvH4_6g18130 Fragaria vesca HOM05D000375 ORTHO05D000240 2.7e-22 109.4 158 48.1
TAR633G1342 Trochodendron aralioides HOM05D000375 ORTHO05D000240 2.7e-22 109.4 158 47.5
DCAR_013369 Daucus carota HOM05D000375 ORTHO05D000240 4.5e-22 108.6 162 48.8
FAN02G1892 Fragaria x ananassa HOM05D000375 ORTHO05D000240 7.7e-22 107.8 155 45.8
FAN05G1340 Fragaria x ananassa HOM05D000375 ORTHO05D000240 7.7e-22 107.8 160 48.8
FAN05G2461 Fragaria x ananassa HOM05D000375 ORTHO05D000240 7.7e-22 107.8 160 48.8
MD14G1017600 Malus domestica HOM05D000375 ORTHO05D000240 2.2e-21 106.3 160 46.2
Phvul.001G187500 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 3.8e-21 105.5 182 42.9
arahy.Tifrunner.gnm1.ann1.KV1X6M Arachis hypogaea HOM05D000375 ORTHO05D000240 6.5e-21 104.8 138 51.4
Lsat_1_v5_gn_6_70601 Lactuca sativa HOM05D000375 ORTHO05D000240 8.5e-21 104.4 166 48.2
arahy.Tifrunner.gnm1.ann1.G4PR1G Arachis hypogaea HOM05D000375 ORTHO05D000240 1.5e-20 103.6 138 50.0
EL10Ac7g16969 Beta vulgaris HOM05D000375 ORTHO05D000240 1.5e-20 103.6 178 47.2
Glyma.03G192200 Glycine max HOM05D000375 ORTHO05D000240 1.9e-20 103.2 169 46.7
MSTRG.26647 Avicennia marina HOM05D000375 ORTHO05D000240 5.5e-20 101.7 145 49.0
Hund19978 Selenicereus undatus HOM05D000375 ORTHO05D000240 7.2e-20 101.3 165 46.7
Ah.08g210830 Amaranthus hybridus HOM05D000375 ORTHO05D000240 9.4e-20 100.9 169 45.0
Medtr7g104050 Medicago truncatula HOM05D000375 ORTHO05D000240 9.4e-20 100.9 167 43.7
Hund04037 Selenicereus undatus HOM05D000375 ORTHO05D000240 2.7e-19 99.4 173 42.8
unitig_8.g4145 Utricularia gibba HOM05D000375 ORTHO05D000240 4.7e-19 98.6 161 49.1
PSO384G2151 Papaver somniferum HOM05D000375 ORTHO05D000240 6.1e-19 98.2 161 43.5
PSO339G4506 Papaver somniferum HOM05D000375 ORTHO05D000240 1.4e-18 97.1 161 42.9
HanXRQChr03g0082241 Helianthus annuus HOM05D000375 ORTHO05D000240 1.8e-18 96.7 141 52.5
DCAR_020773 Daucus carota HOM05D000375 ORTHO05D000240 4.0e-18 95.5 165 45.5
BcaC02g07600 Brassica carinata HOM05D000375 ORTHO05D000240 5.2e-18 95.1 159 45.9
A04p27910 Brassica napus HOM05D000375 ORTHO05D000240 5.2e-18 95.1 167 44.9
BolC4t28021H Brassica oleracea HOM05D000375 ORTHO05D000240 5.2e-18 95.1 159 45.9
BraA04t18282Z Brassica rapa HOM05D000375 ORTHO05D000240 5.2e-18 95.1 167 44.9
Glyma.U031220 Glycine max HOM05D000375 ORTHO05D000240 5.2e-18 95.1 162 43.8
MELO3C009444.2 Cucumis melo HOM05D000375 ORTHO05D000240 6.8e-18 94.7 179 41.3
AUR62043106 Chenopodium quinoa HOM05D000375 ORTHO05D000240 1.2e-17 94.0 127 49.6
AUR62033547 Chenopodium quinoa HOM05D000375 ORTHO05D000240 1.5e-17 93.6 126 50.0
FAN14G1098 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.5e-17 93.6 152 41.4
SHI23940 Sapria himalayana HOM05D000375 ORTHO05D000240 1.5e-17 93.6 167 44.9
Glyma.10G067200 Glycine max HOM05D000375 ORTHO05D000240 5.7e-17 91.7 161 42.9
Phvul.007G222300 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 9.8e-17 90.9 148 44.6
DCAR_009139 Daucus carota HOM05D000375 ORTHO05D000240 1.3e-16 90.5 176 40.9
Actinidia25635 Actinidia chinensis HOM05D000375 ORTHO05D000240 3.7e-16 89.0 102 52.0
VMungo0720G3052 Vigna mungo HOM05D000375 ORTHO05D000240 3.7e-16 89.0 137 44.5
CsaV3_3G036970 Cucumis sativus L. HOM05D000375 ORTHO05D000240 4.8e-16 88.6 182 39.0
Sabra06G0090100 Salix brachista HOM05D000375 ORTHO05D000240 1.1e-15 87.4 161 44.1
Carub.0004s1820 Capsella rubella HOM05D000375 ORTHO05D000240 1.4e-15 87.0 163 41.7
BcaB06g28936 Brassica carinata HOM05D000375 ORTHO05D000240 2.4e-15 86.3 150 43.3
CARHR130700 Cardamine hirsuta HOM05D000375 ORTHO05D000240 4.1e-15 85.5 153 43.8
Psat3g034600 Pisum sativum HOM05D000375 ORTHO05D000240 1.2e-14 84.0 179 39.7
Sp4g18690 Schrenkiella parvula HOM05D000375 ORTHO05D000240 2.0e-14 83.2 153 44.4
BcaC01g05661 Brassica carinata HOM05D000375 ORTHO05D000240 2.7e-14 82.8 133 45.9
A03p20110 Brassica napus HOM05D000375 ORTHO05D000240 2.7e-14 82.8 133 45.9
C03p23540 Brassica napus HOM05D000375 ORTHO05D000240 2.7e-14 82.8 133 45.9
BraA03t11261Z Brassica rapa HOM05D000375 ORTHO05D000240 2.7e-14 82.8 133 45.9
CANSAT51G0007 Cannabis sativa HOM05D000375 ORTHO05D000240 2.7e-14 82.8 211 36.5
SalBow3G1415 Salvia bowleyana HOM05D000375 ORTHO05D000240 3.5e-14 82.4 156 43.6
COL.COLO4_29796 Corchorus olitorius HOM05D000375 ORTHO05D000240 7.7e-14 81.3 84 59.5
AT2G36400 Arabidopsis thaliana HOM05D000375 ORTHO05D000240 1.0e-13 80.9 153 41.2
TPR.G19535 Trifolium pratense HOM05D000375 ORTHO05D000240 1.0e-13 80.9 143 41.3
Aa31LG10G8090 Aethionema arabicum HOM05D000375 ORTHO05D000240 1.7e-13 80.1 149 42.3
CDE02G4227 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 2.9e-13 79.3 166 39.8
Potri.006G115200 Populus trichocarpa HOM05D000375 ORTHO05D000240 2.9e-13 79.3 140 46.4
BolC3t14750H Brassica oleracea HOM05D000375 ORTHO05D000240 6.5e-13 78.2 133 45.1
BcaB01g03841 Brassica carinata HOM05D000375 ORTHO05D000240 1.1e-12 77.4 120 45.8
THA.LOC104823461 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 1.5e-12 77.0 141 44.0
HPP92_011894 Vanilla planifolia HOM05D000375 ORTHO05D000240 2.5e-12 76.3 127 44.9
AL4G32560 Arabidopsis lyrata HOM05D000375 ORTHO05D000240 3.2e-12 75.9 153 40.5
Thhalv10016778m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 5.5e-12 75.1 150 42.0
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 4.7e-11 72.0 165 37.6
BcaC02g11756 Brassica carinata HOM05D000375 ORTHO05D000240 4.7e-11 72.0 152 40.1
C04p11680 Brassica napus HOM05D000375 ORTHO05D000240 4.7e-11 72.0 152 40.1
BolC4t22817H Brassica oleracea HOM05D000375 ORTHO05D000240 4.7e-11 72.0 152 40.1
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 6.1e-11 71.6 165 37.6
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 6.1e-11 71.6 165 37.6
Aqoxy4G02853 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 1.0e-10 70.9 144 39.6
Thhalv10010453m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 1.0e-10 70.9 144 41.7
Sp5g09420 Schrenkiella parvula HOM05D000375 ORTHO05D000240 1.8e-10 70.1 150 39.3
unitig_749.g14291 Utricularia gibba HOM05D000375 ORTHO05D000240 1.8e-10 70.1 140 42.9
Aa31LG5G21580 Aethionema arabicum HOM05D000375 ORTHO05D000240 3.0e-10 69.3 52 67.3
BcaB02g09355 Brassica carinata HOM05D000375 ORTHO05D000240 3.0e-10 69.3 114 43.9
Thhalv10022062m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 4.0e-10 68.9 113 45.1
Sc20g0006130 Simmondsia chinensis HOM05D000375 ORTHO05D000240 6.8e-10 68.2 173 36.4
THA.LOC104805065 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 8.8e-10 67.8 130 43.1
ATR0820G058 Amborella trichopoda HOM05D000375 ORTHO05D000240 1.5e-09 67.0 101 46.5
BcaB01g00330 Brassica carinata HOM05D000375 ORTHO05D000240 2.6e-09 66.2 116 44.8
BraA07t29817Z Brassica rapa HOM05D000375 ORTHO05D000240 3.4e-09 65.9 147 38.1
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 4.4e-09 65.5 147 37.4
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 7.5e-09 64.7 113 42.5
BolC6t37262H Brassica oleracea HOM05D000375 ORTHO05D000240 7.5e-09 64.7 113 42.5
BraA04t16362Z Brassica rapa HOM05D000375 ORTHO05D000240 1.3e-08 63.9 152 37.5
BolC8t50429H Brassica oleracea HOM05D000375 ORTHO05D000240 2.2e-08 63.2 106 45.3
BraA05t19896Z Brassica rapa HOM05D000375 ORTHO05D000240 2.2e-08 63.2 87 47.1
AT3G52910 Arabidopsis thaliana HOM05D000375 ORTHO05D000240 3.7e-08 62.4 151 37.1
BcaC07g39654 Brassica carinata HOM05D000375 ORTHO05D000240 3.7e-08 62.4 106 42.5
A05p09370 Brassica napus HOM05D000375 ORTHO05D000240 3.7e-08 62.4 84 47.6
C08p28160 Brassica napus HOM05D000375 ORTHO05D000240 3.7e-08 62.4 106 42.5
CARHR162790 Cardamine hirsuta HOM05D000375 ORTHO05D000240 3.7e-08 62.4 144 38.2
AL5G33700 Arabidopsis lyrata HOM05D000375 ORTHO05D000240 4.9e-08 62.0 114 42.1
BcaC08g44606 Brassica carinata HOM05D000375 ORTHO05D000240 4.9e-08 62.0 132 38.6
A09p45970 Brassica napus HOM05D000375 ORTHO05D000240 6.3e-08 61.6 146 37.0
BraA09t40058Z Brassica rapa HOM05D000375 ORTHO05D000240 6.3e-08 61.6 146 37.0
Carub.0005s1939 Capsella rubella HOM05D000375 ORTHO05D000240 8.3e-08 61.2 166 35.5
BcaB02g08547 Brassica carinata HOM05D000375 ORTHO05D000240 2.4e-07 59.7 162 34.6
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 5.4e-07 58.5 139 36.0
CDE08G0533 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 2.0e-06 56.6 122 41.0
unitig_26.g9247 Utricularia gibba HOM05D000375 ORTHO05D000240 4.5e-06 55.5 112 40.2


User provided reference genes

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