Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002644 Solanum tuberosum HOM05D008898 ORTHO05D001155 2.8e-125 451.8 207 100.0
Nitab4.5_0002383g0130 Nicotiana tabacum HOM05D008898 ORTHO05D001155 3.8e-58 228.8 212 53.8
CAN.G1110.53 Capsicum annuum HOM05D001729 ORTHO05D001155 3.4e-54 215.7 193 53.4
PGSC0003DMG400025009 Solanum tuberosum HOM05D008898 ORTHO05D001155 1.1e-52 210.7 193 51.8
Sopen10g002860 Solanum pennellii HOM05D008898 ORTHO05D001155 1.4e-52 210.3 192 52.1
Dinv35017 Davidia involucrata HOM05D008898 ORTHO05D001155 2.6e-30 136.3 196 39.8
Nitab4.5_0000207g0170 Nicotiana tabacum HOM05D001729 ORTHO05D001155 4.4e-30 135.6 193 38.9
CAN.G438.60 Capsicum annuum HOM05D008898 ORTHO05D001155 6.4e-29 131.7 141 48.2
SGA_v2.0_scaffold1G00575 Striga asiatica HOM05D001729 ORTHO05D001155 2.3e-26 123.2 194 38.7
CSS0028413 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 1.1e-25 120.9 206 36.9
CSS0020895 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 1.5e-25 120.6 203 37.4
HanXRQChr15g0474331 Helianthus annuus HOM05D008898 ORTHO05D001155 1.9e-25 120.2 196 35.7
HanXRQChr15g0474381 Helianthus annuus HOM05D008898 ORTHO05D001155 4.3e-25 119.0 196 35.7
HanXRQChr01g0029461 Helianthus annuus HOM05D008898 ORTHO05D001155 2.1e-24 116.7 196 35.7
Lsat_1_v5_gn_0_16480 Lactuca sativa HOM05D008898 ORTHO05D001155 8.1e-24 114.8 196 34.2
HanXRQChr17g0547181 Helianthus annuus HOM05D008898 ORTHO05D001155 4.0e-23 112.5 196 33.2
HanXRQChr15g0474391 Helianthus annuus HOM05D008898 ORTHO05D001155 5.2e-23 112.1 198 34.8
Lj7A407T50 Lonicera japonica HOM05D008898 ORTHO05D001155 8.9e-23 111.3 180 37.8
ECA246G1437 Erigeron canadensis HOM05D008898 ORTHO05D001155 1.2e-22 110.9 196 34.2
HanXRQChr15g0474341 Helianthus annuus HOM05D008898 ORTHO05D001155 1.5e-22 110.5 196 34.2
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 2.0e-22 110.2 197 34.0
SGA_v2.0_scaffold1G00761 Striga asiatica HOM05D001729 ORTHO05D001155 1.3e-21 107.5 199 36.2
CSS0035119 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 4.1e-20 102.4 203 34.0
Hund15878 Selenicereus undatus HOM05D001729 ORTHO05D001155 4.1e-20 102.4 204 34.8
SGA_v2.0_scaffold232G43501 Striga asiatica HOM05D001729 ORTHO05D001155 7.1e-20 101.7 195 33.3
Lsat_1_v5_gn_5_38761 Lactuca sativa HOM05D008898 ORTHO05D001155 1.3e-18 97.4 208 32.2
Dinv34857 Davidia involucrata HOM05D001729 ORTHO05D001155 5.1e-18 95.5 151 35.8
Lsat_1_v5_gn_5_38300 Lactuca sativa HOM05D008898 ORTHO05D001155 5.1e-18 95.5 205 32.2
Lsat_1_v5_gn_5_38981 Lactuca sativa HOM05D008898 ORTHO05D001155 4.3e-17 92.4 207 30.4
SGA_v2.0_scaffold1G00346 Striga asiatica HOM05D001729 ORTHO05D001155 2.1e-16 90.1 155 34.2
Lsat_1_v5_gn_5_38200 Lactuca sativa HOM05D008898 ORTHO05D001155 3.6e-16 89.4 203 30.0
Gorai.006G112800 Gossypium raimondii HOM05D001729 ORTHO05D001155 3.1e-15 86.3 193 31.1
Nitab4.5_0001148g0030 Nicotiana tabacum HOM05D008898 ORTHO05D001155 3.1e-15 86.3 41 87.8
Gohir.D09G096101 Gossypium hirsutum HOM05D001729 ORTHO05D001155 1.2e-14 84.3 193 31.1
COL.COLO4_34020 Corchorus olitorius HOM05D001729 ORTHO05D001155 2.6e-14 83.2 195 31.8
Gohir.A09G096401 Gossypium hirsutum HOM05D001729 ORTHO05D001155 4.4e-14 82.4 193 30.1
Lsat_1_v5_gn_4_180620 Lactuca sativa HOM05D008898 ORTHO05D001155 4.4e-14 82.4 192 30.2
DCAR_004585 Daucus carota HOM05D001729 ORTHO05D001155 9.9e-14 81.3 199 28.1
QL02p078505 Quercus lobata HOM05D008898 ORTHO05D001155 2.9e-13 79.7 155 33.5
Duzib170G0599 Durio zibethinus HOM05D001729 ORTHO05D001155 1.9e-12 77.0 194 28.9
Sabra15G0014700 Salix brachista HOM05D001729 ORTHO05D001155 5.4e-12 75.5 197 30.5
AUR62020544 Chenopodium quinoa HOM05D017185 ORTHO05D002895 1.6e-11 73.9 165 27.9
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.7e-11 73.2 168 29.2
Lj2C966T5 Lonicera japonica HOM05D008898 ORTHO05D001155 6.0e-11 72.0 200 28.5
Migut.L01260 Erythranthe guttata HOM05D001729 ORTHO05D001155 7.8e-11 71.6 146 28.8
Rhsim08G0237800 Rhododendron simsii HOM05D001729 ORTHO05D001155 8.7e-10 68.2 199 29.1
QL07p036134 Quercus lobata HOM05D001729 ORTHO05D001155 1.1e-09 67.8 157 31.8
EL10Ac1g01661 Beta vulgaris HOM05D001340 ORTHO05D005342 4.3e-09 65.9 189 28.6
QL05p014501 Quercus lobata HOM05D001729 ORTHO05D001155 9.6e-09 64.7 200 27.5
QL07p036147 Quercus lobata HOM05D001729 ORTHO05D001155 1.2e-08 64.3 211 27.5
CANSAT21G1526 Cannabis sativa HOM05D012549 ORTHO05D013546 3.6e-08 62.8 201 28.9
Os05g0467700 Oryza sativa ssp. japonica HOM05D014877 ORTHO05D017093 3.1e-07 59.7 148 31.8
Os03g0333800 Oryza sativa ssp. japonica HOM05D009075 ORTHO05D011069 6.9e-07 58.5 153 27.5
Os05g0467400 Oryza sativa ssp. japonica HOM05D014877 ORTHO05D017093 6.9e-07 58.5 137 31.4
Sc19g0000590 Simmondsia chinensis HOM05D001729 ORTHO05D001155 6.9e-07 58.5 161 26.1
Os03g0111600 Oryza sativa ssp. japonica HOM05D009075 ORTHO05D011069 1.5e-06 57.4 158 28.5
PGSC0003DMG400005638 Solanum tuberosum HOM05D001729 ORTHO05D001155 1.5e-06 57.4 95 33.7
Potri.011G004800 Populus trichocarpa HOM05D001729 ORTHO05D001155 3.4e-06 56.2 119 30.3
Duzib147G0011 Durio zibethinus HOM05D001729 ORTHO05D001155 5.8e-06 55.5 90 36.7
Sabra11G0003700 Salix brachista HOM05D001729 ORTHO05D001155 5.8e-06 55.5 119 30.3
Os05g0251200 Oryza sativa ssp. japonica HOM05D014877 ORTHO05D017093 9.9e-06 54.7 103 33.0


User provided reference genes

Program Settings