Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 3.7e-111 404.8 198 100.0
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 1.9e-107 392.5 198 96.5
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 1.9e-102 375.9 198 91.4
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.0e-100 370.2 197 90.4
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.9e-100 368.2 197 89.3
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 7.3e-99 364.0 184 96.2
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 4.4e-88 328.2 188 83.5
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 2.4e-86 322.4 194 79.4
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 6.0e-85 317.8 191 78.5
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.0e-84 317.0 192 79.2
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.7e-84 316.2 189 78.3
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 2.3e-84 315.8 189 80.4
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.1e-81 307.0 191 75.4
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 4.0e-81 305.1 191 77.0
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 6.9e-81 304.3 186 77.4
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 9.0e-81 303.9 190 76.3
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 2.0e-80 302.8 192 73.4
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 2.0e-80 302.8 191 75.4
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 3.4e-80 302.0 189 75.7
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 1.3e-79 300.1 188 77.7
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 4.9e-79 298.1 191 74.9
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 6.4e-79 297.7 196 73.0
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 6.4e-79 297.7 191 74.3
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.4e-78 295.8 192 74.5
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 2.4e-78 295.8 191 72.8
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 4.2e-78 295.0 190 75.3
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 4.2e-78 295.0 177 80.2
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 4.2e-78 295.0 191 73.3
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 4.2e-78 295.0 197 70.6
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 9.3e-78 293.9 191 73.8
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 2.7e-77 292.4 187 74.3
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 3.5e-77 292.0 191 72.3
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.6e-77 291.6 191 73.8
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 4.6e-77 291.6 188 75.0
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 7.9e-77 290.8 191 73.3
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 1.3e-76 290.0 176 80.1
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.3e-76 290.0 191 71.7
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.0e-76 288.9 189 73.5
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 3.9e-76 288.5 191 72.3
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 3.9e-76 288.5 196 69.9
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 3.9e-76 288.5 186 74.7
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 5.1e-76 288.1 191 73.3
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 6.6e-76 287.7 191 72.3
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.1e-75 287.0 190 73.2
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 1.1e-75 287.0 186 73.7
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.3e-75 285.4 194 75.3
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 4.3e-75 285.0 195 71.3
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.3e-75 285.0 190 72.6
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.3e-74 283.5 194 70.6
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.6e-74 283.1 190 69.5
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 1.6e-74 283.1 191 72.8
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 2.8e-74 282.3 189 73.0
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.8e-74 282.3 189 72.5
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 3.6e-74 282.0 188 72.9
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.8e-74 281.6 189 72.0
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 8.1e-74 280.8 190 71.1
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 8.1e-74 280.8 194 68.6
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 1.1e-73 280.4 188 69.7
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.1e-73 280.4 172 77.3
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.1e-73 280.4 190 71.1
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 1.1e-73 280.4 190 70.0
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 4.0e-73 278.5 191 68.6
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 9.0e-73 277.3 191 71.7
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 1.2e-72 276.9 193 71.5
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 3.4e-72 275.4 168 78.6
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 3.4e-72 275.4 186 68.8
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 5.8e-72 274.6 191 68.6
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 2.2e-71 272.7 191 70.7
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 2.2e-71 272.7 191 69.6
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 2.2e-71 272.7 191 67.5
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 4.9e-71 271.6 191 69.1
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 4.9e-71 271.6 190 69.5
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.1e-70 270.4 189 68.3
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 3.2e-70 268.9 190 67.9
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 4.2e-70 268.5 186 71.0
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 7.1e-70 267.7 177 72.9
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.2e-69 266.9 170 72.9
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.6e-69 266.5 195 68.2
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 2.1e-69 266.2 186 69.4
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 2.7e-69 265.8 167 79.0
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.7e-69 265.8 168 78.0
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 6.0e-69 264.6 191 68.6
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 7.9e-69 264.2 186 67.7
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.3e-68 262.7 188 68.6
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 5.1e-68 261.5 169 75.1
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 6.7e-68 261.2 169 74.0
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 8.7e-68 260.8 183 69.9
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 1.1e-67 260.4 166 74.1
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.9e-67 259.6 191 67.0
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 3.3e-67 258.8 191 65.4
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 5.6e-67 258.1 169 74.0
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.6e-66 256.5 186 65.1
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 2.8e-66 255.8 192 65.1
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 3.7e-66 255.4 168 74.4
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 1.1e-65 253.8 188 64.4
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 1.8e-65 253.1 192 65.1
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.2e-64 250.4 168 73.8
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 1.2e-64 250.4 175 69.1
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.0e-64 249.6 166 73.5
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 2.6e-64 249.2 200 63.0
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 7.6e-64 247.7 191 62.8
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.7e-63 246.5 202 61.9
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 4.9e-63 245.0 175 70.9
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.1e-62 243.8 184 63.6
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 1.1e-62 243.8 188 59.6
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.5e-62 242.7 168 69.0
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.6e-61 240.0 191 62.8
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 2.1e-61 239.6 166 69.9
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.7e-61 239.2 188 64.4
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.7e-61 239.2 166 70.5
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 1.0e-60 237.3 169 69.8
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 6.7e-60 234.6 191 57.6
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 8.7e-60 234.2 177 66.7
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.9e-59 233.0 187 63.1
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.7e-58 228.8 187 62.0
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 4.8e-58 228.4 139 78.4
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 6.3e-58 228.0 160 66.9
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 6.3e-58 228.0 139 77.0
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 5.3e-57 224.9 197 60.4
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 6.9e-57 224.6 198 61.6
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.0e-56 223.0 168 63.7
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 1.9e-54 216.5 195 54.4
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.0e-52 210.7 190 54.7
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.5e-51 206.8 196 52.0
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 1.3e-50 203.8 190 55.3
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 3.4e-48 195.7 125 76.8
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 1.0e-47 194.1 114 82.5
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 1.9e-46 189.9 131 70.2
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.7e-42 176.8 119 71.4
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 8.2e-42 174.5 131 60.3
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 6.9e-41 171.4 187 46.0
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 5.0e-39 165.2 177 53.1
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.1e-36 155.2 114 66.7
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.2e-32 144.1 117 65.0
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 9.4e-14 81.3 60 66.7
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 2.6e-11 73.2 172 33.7
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 3.7e-10 69.3 56 55.4
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 6.3e-10 68.6 52 59.6
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 1.4e-09 67.4 173 30.1
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 5.4e-09 65.5 54 59.3
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 7.7e-08 61.6 173 28.3
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 7.7e-08 61.6 172 26.7
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.8e-07 59.3 187 26.7
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 5.0e-07 58.9 186 26.9
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 6.6e-07 58.5 174 25.9
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 6.6e-07 58.5 186 28.5
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 6.6e-07 58.5 174 29.3
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 8.6e-07 58.2 170 29.4
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 8.6e-07 58.2 175 27.4


User provided reference genes

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