Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 8.8e-86 320.1 144 100.0
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 4.8e-84 314.3 144 97.9
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 4.1e-83 311.2 144 96.5
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 4.1e-83 311.2 144 96.5
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 6.7e-78 293.9 144 91.7
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 9.1e-75 283.5 144 88.9
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 6.0e-50 201.1 144 64.6
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.5e-48 195.7 144 63.2
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 5.8e-45 184.5 142 59.2
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 9.8e-45 183.7 144 56.9
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.1e-43 180.3 144 56.9
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 1.4e-43 179.9 144 60.4
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 2.4e-43 179.1 145 57.2
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 4.1e-43 178.3 149 58.4
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 5.4e-43 177.9 144 55.6
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 9.2e-43 177.2 142 56.3
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 9.2e-43 177.2 144 58.3
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.2e-42 176.8 147 55.8
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 1.6e-42 176.4 147 55.8
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 1.6e-42 176.4 142 57.7
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 2.1e-42 176.0 145 57.2
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.7e-42 175.6 147 55.8
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 3.5e-42 175.3 142 56.3
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 1.0e-41 173.7 147 59.2
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 1.0e-41 173.7 142 55.6
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 1.3e-41 173.3 142 54.2
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 1.7e-41 172.9 144 56.9
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 1.7e-41 172.9 145 60.7
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 2.3e-41 172.6 142 57.0
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 3.9e-41 171.8 142 57.0
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 3.9e-41 171.8 142 57.0
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 5.0e-41 171.4 142 55.6
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 5.0e-41 171.4 142 54.9
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 5.0e-41 171.4 142 54.9
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.9e-40 169.5 142 54.2
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 2.5e-40 169.1 144 53.5
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 3.3e-40 168.7 142 53.5
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 4.3e-40 168.3 142 53.5
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 5.6e-40 167.9 142 52.1
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 5.6e-40 167.9 142 52.8
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 7.3e-40 167.5 142 53.5
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 1.2e-39 166.8 145 53.8
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 1.2e-39 166.8 142 52.8
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 1.6e-39 166.4 142 53.5
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 1.6e-39 166.4 144 55.6
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 2.1e-39 166.0 141 53.9
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 2.1e-39 166.0 145 57.9
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 6.2e-39 164.5 142 54.2
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 6.2e-39 164.5 142 52.8
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 1.8e-38 162.9 145 51.7
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 2.3e-38 162.5 142 54.2
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 3.1e-38 162.2 142 50.7
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 4.0e-38 161.8 142 51.4
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 5.2e-38 161.4 142 52.8
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 5.2e-38 161.4 144 54.9
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 8.9e-38 160.6 146 52.7
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 8.9e-38 160.6 144 52.1
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.2e-37 160.2 142 53.5
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 3.4e-37 158.7 142 53.5
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 4.4e-37 158.3 144 51.4
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 4.4e-37 158.3 81 88.9
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 4.4e-37 158.3 142 50.7
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 4.4e-37 158.3 142 52.1
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 1.7e-36 156.4 143 53.1
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 2.2e-36 156.0 142 50.7
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 2.9e-36 155.6 144 50.7
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 1.1e-35 153.7 142 50.7
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 1.4e-35 153.3 142 50.0
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 1.4e-35 153.3 142 50.0
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 1.4e-35 153.3 142 50.0
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 5.4e-35 151.4 142 49.3
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 5.4e-35 151.4 144 50.7
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 7.1e-35 151.0 144 50.0
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 7.1e-35 151.0 148 51.4
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 9.2e-35 150.6 144 50.0
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 2.1e-34 149.4 142 52.1
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 2.7e-34 149.1 145 49.0
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 2.7e-34 149.1 144 47.2
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 3.5e-34 148.7 144 50.7
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 6.0e-34 147.9 144 50.0
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 1.0e-33 147.1 148 48.6
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 1.0e-33 147.1 142 49.3
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 1.0e-33 147.1 147 49.7
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 8.6e-33 144.1 144 49.3
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 8.6e-33 144.1 100 64.0
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 1.1e-32 143.7 142 47.9
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 7.3e-32 141.0 144 46.5
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.8e-31 139.0 109 60.6
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 6.2e-31 137.9 141 46.1
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.8e-30 136.3 129 52.7
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 2.4e-30 136.0 142 47.9
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 1.2e-29 133.7 150 44.7
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 4.4e-29 131.7 152 45.4
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 5.8e-29 131.3 119 52.1
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.7e-28 129.8 66 89.4
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 5.4e-27 124.8 144 43.8
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 9.2e-27 124.0 150 44.0
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.2e-26 123.6 146 44.5
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.0e-25 120.6 99 56.6
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.7e-25 119.8 147 43.5
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 9.6e-24 114.0 142 40.1
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 6.2e-23 111.3 142 39.4
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 2.2e-20 102.8 142 40.8
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 3.8e-20 102.1 149 40.3
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.2e-18 97.1 78 53.8
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 3.0e-17 92.4 101 44.6
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 6.6e-17 91.3 71 56.3
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 4.3e-16 88.6 65 63.1
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 4.3e-16 88.6 65 61.5
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 7.3e-16 87.8 93 44.1
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 1.3e-15 87.0 146 39.0
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 1.6e-15 86.7 76 53.9
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 1.1e-14 84.0 65 58.5
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 4.0e-14 82.0 67 55.2
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 2.0e-13 79.7 61 63.9
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 2.6e-13 79.3 81 48.1
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 6.0e-10 68.2 47 59.6
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 5.1e-09 65.1 37 70.3
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 9.6e-08 60.8 99 35.4


User provided reference genes

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