Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 2.8e-97 358.6 181 100.0
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 6.3e-49 198.0 239 52.3
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 2.4e-48 196.1 239 51.5
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 2.4e-48 196.1 239 51.5
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 9.8e-42 174.1 239 46.0
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.3e-41 173.7 237 46.4
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 3.7e-41 172.2 239 46.4
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 3.7e-41 172.2 225 47.6
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 2.4e-40 169.5 237 45.1
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 3.1e-40 169.1 237 45.1
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 7.0e-40 167.9 239 45.2
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 3.0e-30 136.0 240 38.3
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 1.2e-26 124.0 139 48.9
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 2.0e-26 123.2 139 48.9
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 9.8e-26 120.9 154 46.8
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 2.9e-25 119.4 117 53.0
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 2.9e-25 119.4 114 52.6
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 4.9e-25 118.6 93 64.5
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 6.4e-25 118.2 92 62.0
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 1.1e-24 117.5 92 63.0
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.9e-24 116.7 181 40.3
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 3.2e-24 115.9 147 46.3
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 5.4e-24 115.2 116 50.0
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 9.2e-24 114.4 111 53.2
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.2e-23 114.0 101 60.4
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.2e-23 114.0 116 51.7
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.1e-23 113.2 140 47.1
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 4.6e-23 112.1 92 59.8
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 6.0e-23 111.7 140 46.4
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 7.8e-23 111.3 147 46.9
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.7e-22 110.2 114 48.2
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 3.0e-22 109.4 86 64.0
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 3.0e-22 109.4 92 58.7
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 6.6e-22 108.2 92 58.7
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 6.6e-22 108.2 92 57.6
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 8.6e-22 107.8 114 50.0
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 8.6e-22 107.8 154 40.9
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 1.1e-21 107.5 112 53.6
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.5e-21 107.1 140 44.3
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 5.6e-21 105.1 92 56.5
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 7.3e-21 104.8 92 56.5
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 7.3e-21 104.8 117 51.3
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 7.3e-21 104.8 92 58.7
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 9.5e-21 104.4 175 37.1
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 9.5e-21 104.4 110 47.3
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.6e-20 103.6 92 56.5
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.6e-20 103.6 92 55.4
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.6e-20 103.6 151 39.7
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 2.1e-20 103.2 92 56.5
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 2.1e-20 103.2 116 48.3
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 2.8e-20 102.8 142 38.7
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 3.6e-20 102.4 91 54.9
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 6.2e-20 101.7 87 55.2
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.1e-19 100.9 93 54.8
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.8e-19 100.1 116 49.1
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.3e-19 99.8 91 51.6
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 2.3e-19 99.8 87 52.9
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 3.1e-19 99.4 91 50.5
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 3.1e-19 99.4 92 57.6
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 3.1e-19 99.4 92 57.6
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 6.8e-19 98.2 94 55.3
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 6.8e-19 98.2 138 40.6
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 6.8e-19 98.2 83 59.0
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 6.8e-19 98.2 115 48.7
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 8.9e-19 97.8 91 54.9
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 8.9e-19 97.8 115 50.4
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.2e-18 97.4 104 49.0
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 1.5e-18 97.1 90 52.2
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.6e-18 96.3 116 46.6
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 2.6e-18 96.3 91 49.5
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 2.6e-18 96.3 91 52.7
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.4e-18 95.9 90 57.8
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 3.4e-18 95.9 93 52.7
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 4.4e-18 95.5 90 56.7
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.4e-18 95.5 90 56.7
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 4.4e-18 95.5 100 50.0
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 5.8e-18 95.1 95 55.8
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.8e-18 95.1 90 56.7
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 7.5e-18 94.7 142 38.0
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 9.9e-18 94.4 91 53.8
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 9.9e-18 94.4 92 52.2
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.9e-18 94.4 90 56.7
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 9.9e-18 94.4 141 36.9
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.3e-17 94.0 91 54.9
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 1.3e-17 94.0 157 38.9
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.7e-17 93.6 90 48.9
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.7e-17 93.6 90 48.9
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.7e-17 93.6 91 52.7
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 2.9e-17 92.8 92 56.5
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 3.7e-17 92.4 84 53.6
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 4.9e-17 92.0 91 53.8
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 4.9e-17 92.0 91 50.5
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.4e-17 91.7 90 54.4
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 6.4e-17 91.7 87 51.7
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.1e-16 90.9 91 53.8
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 1.9e-16 90.1 92 50.0
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 4.1e-16 89.0 94 48.9
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 5.4e-16 88.6 92 48.9
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 5.4e-16 88.6 92 48.9
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 5.4e-16 88.6 92 48.9
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 7.1e-16 88.2 94 50.0
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 7.1e-16 88.2 94 50.0
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 9.2e-16 87.8 83 56.6
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 1.2e-15 87.4 94 47.9
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.2e-15 87.4 100 51.0
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.2e-15 87.4 87 52.9
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.6e-15 87.0 88 54.5
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.6e-15 85.5 96 52.1
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 4.6e-15 85.5 91 45.1
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.8e-15 84.7 88 53.4
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.7e-14 83.6 87 49.4
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 1.7e-14 83.6 108 43.5
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.1e-14 82.0 88 52.3
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.6e-14 81.6 112 42.9
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 8.6e-14 81.3 90 52.2
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.1e-13 80.9 150 34.0
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 4.3e-13 79.0 151 33.8
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 4.3e-13 79.0 126 36.5
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 4.3e-13 79.0 94 44.7
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 5.6e-13 78.6 92 43.5
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 5.6e-13 78.6 83 49.4
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 7.3e-13 78.2 85 42.4
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 1.2e-12 77.4 96 49.0
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 1.6e-12 77.0 82 50.0
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.8e-12 76.3 92 45.7
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.2e-12 75.1 107 41.1
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 1.5e-10 70.5 59 57.6
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.0e-10 70.1 83 44.6
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.3e-09 67.4 68 45.6
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 4.9e-09 65.5 154 31.8
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 8.4e-09 64.7 154 31.8
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 1.4e-08 63.9 108 35.2
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 9.3e-08 61.2 108 36.1
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 2.1e-07 60.1 67 46.3
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.7e-07 59.7 64 53.1


User provided reference genes

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