Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002292 Solanum tuberosum HOM05D007799 ORTHO05D009854 3.3e-144 515.0 252 100.0
Nitab4.5_0005655g0010 Nicotiana tabacum HOM05D007799 ORTHO05D009854 5.6e-120 434.5 254 83.9
Peaxi162Scf00045g02414 Petunia axillaris HOM05D007799 ORTHO05D009854 5.6e-112 407.9 243 78.6
Nitab4.5_0000315g0030 Nicotiana tabacum HOM05D007799 ORTHO05D009854 5.6e-104 381.3 253 74.7
Prupe.4G085700 Prunus persica HOM05D007799 ORTHO05D009854 1.8e-81 306.6 240 61.2
Sopen08g008720 Solanum pennellii HOM05D007799 ORTHO05D009854 3.9e-81 305.4 158 94.3
Oeu032721.1 Olea europaea HOM05D007799 ORTHO05D009854 8.7e-81 304.3 223 64.1
Cfa000897 Carpinus fangiana HOM05D007799 ORTHO05D009854 1.9e-80 303.1 242 59.9
CiPaw.10G088800 Carya illinoinensis HOM05D007799 ORTHO05D009854 5.7e-80 301.6 246 58.5
Manes.15G125000 Manihot esculenta HOM05D007799 ORTHO05D009854 1.8e-78 296.6 238 58.8
MD10G1258100 Malus domestica HOM05D007799 ORTHO05D009854 3.1e-78 295.8 236 60.2
QL05p055084 Quercus lobata HOM05D007799 ORTHO05D009854 3.1e-78 295.8 236 59.3
Solyc08g023510.3 Solanum lycopersicum HOM05D007799 ORTHO05D009854 3.1e-78 295.8 151 94.7
CiPaw.09G119600 Carya illinoinensis HOM05D007799 ORTHO05D009854 5.9e-77 291.6 235 57.4
RcHm_v2.0_Chr5g0014941 Rosa chinensis HOM05D007799 ORTHO05D009854 1.3e-76 290.4 239 57.7
MD05G1279400 Malus domestica HOM05D007799 ORTHO05D009854 1.7e-76 290.0 240 58.3
Duzib192G0648 Durio zibethinus HOM05D007799 ORTHO05D009854 2.2e-76 289.7 242 57.4
Lalb_Chr20g0117681 Lupinus albus HOM05D007799 ORTHO05D009854 3.8e-76 288.9 240 56.2
Thecc.06G144300 Theobroma cacao HOM05D007799 ORTHO05D009854 1.9e-75 286.6 237 58.2
FAN11G0145 Fragaria x ananassa HOM05D007799 ORTHO05D009854 2.5e-75 286.2 239 57.3
FAN16G3425 Fragaria x ananassa HOM05D007799 ORTHO05D009854 2.5e-75 286.2 239 56.9
FvH4_3g05030 Fragaria vesca HOM05D007799 ORTHO05D009854 3.2e-75 285.8 239 57.3
FAN25G3832 Fragaria x ananassa HOM05D007799 ORTHO05D009854 4.2e-75 285.4 239 57.3
Eucgr.D00266 Eucalyptus grandis HOM05D007799 ORTHO05D009854 9.4e-75 284.3 226 61.9
Cc00_g02020 Coffea canephora HOM05D007799 ORTHO05D009854 1.6e-74 283.5 243 56.8
Duzib235G1165 Durio zibethinus HOM05D007799 ORTHO05D009854 2.1e-74 283.1 235 59.1
Lj6g0006831 Lotus japonicus HOM05D007799 ORTHO05D009854 2.1e-74 283.1 243 53.9
SalBow8G4130 Salvia bowleyana HOM05D007799 ORTHO05D009854 7.9e-74 281.2 227 60.8
COL.COLO4_31009 Corchorus olitorius HOM05D007799 ORTHO05D009854 1.0e-73 280.8 227 59.0
FAN21G3556 Fragaria x ananassa HOM05D007799 ORTHO05D009854 1.0e-73 280.8 239 56.5
Glyma.13G221700 Glycine max HOM05D007799 ORTHO05D009854 1.0e-73 280.8 239 54.8
Glyma.15G090500 Glycine max HOM05D007799 ORTHO05D009854 1.4e-73 280.4 235 55.7
CANSAT35G1982 Cannabis sativa HOM05D007799 ORTHO05D009854 1.1e-72 277.3 219 61.6
CSS0034958 Camellia sinensis var. sinensis HOM05D007799 ORTHO05D009854 1.5e-72 276.9 227 58.6
Ciclev10016395m.g Citrus clementina HOM05D007799 ORTHO05D009854 3.3e-72 275.8 226 58.0
Oeu031191.1 Olea europaea HOM05D007799 ORTHO05D009854 3.3e-72 275.8 219 61.2
PGR083G2472 Punica granatum HOM05D007799 ORTHO05D009854 4.3e-72 275.4 222 58.6
Medtr2g018670 Medicago truncatula HOM05D007799 ORTHO05D009854 5.7e-72 275.0 239 55.2
VMungo0540G2150 Vigna mungo HOM05D007799 ORTHO05D009854 1.3e-71 273.9 240 53.8
CSS0035706 Camellia sinensis var. sinensis HOM05D007799 ORTHO05D009854 1.7e-71 273.5 227 58.1
Migut.K01168 Erythranthe guttata HOM05D007799 ORTHO05D009854 2.2e-71 273.1 209 62.2
Atru.chr10.1081 Acer truncatum HOM05D007799 ORTHO05D009854 3.1e-70 269.2 218 60.1
Rhsim13G0117700 Rhododendron simsii HOM05D007799 ORTHO05D009854 3.1e-70 269.2 221 59.7
Lalb_Chr15g0086631 Lupinus albus HOM05D007799 ORTHO05D009854 4.1e-70 268.9 238 53.4
Psat1g192080 Pisum sativum HOM05D007799 ORTHO05D009854 1.2e-69 267.3 239 53.6
TPR.G26257 Trifolium pratense HOM05D007799 ORTHO05D009854 3.4e-69 265.8 241 53.5
Gorai.010G237400 Gossypium raimondii HOM05D007799 ORTHO05D009854 5.9e-69 265.0 220 58.6
Potri.011G081701 Populus trichocarpa HOM05D007799 ORTHO05D009854 7.7e-69 264.6 225 57.8
Lsat_1_v5_gn_7_27461 Lactuca sativa HOM05D007799 ORTHO05D009854 1.0e-68 264.2 240 52.9
Ca_00511_v3 Cicer arietinum L. HOM05D007799 ORTHO05D009854 1.7e-68 263.5 239 52.7
DCAR_003890 Daucus carota HOM05D007799 ORTHO05D009854 6.5e-68 261.5 247 51.8
Gohir.A06G196000 Gossypium hirsutum HOM05D007799 ORTHO05D009854 1.4e-67 260.4 217 57.6
Glyma.05G143400 Glycine max HOM05D007799 ORTHO05D009854 2.5e-67 259.6 239 53.1
Glyma.08G099800 Glycine max HOM05D007799 ORTHO05D009854 3.2e-67 259.2 239 53.1
Gohir.D06G203500 Gossypium hirsutum HOM05D007799 ORTHO05D009854 3.2e-67 259.2 215 58.1
Haze_05684 Corylus avellana HOM05D007799 ORTHO05D009854 1.2e-66 257.3 242 54.1
VMungo0251G0945 Vigna mungo HOM05D007799 ORTHO05D009854 2.1e-66 256.5 237 52.3
MBI02_g12199_MAGBIO Magnolia biondii HOM05D007799 ORTHO05D009854 1.5e-64 250.4 240 48.8
GSVIVG01021549001 Vitis vinifera HOM05D007799 ORTHO05D009854 7.4e-64 248.1 217 54.8
Phvul.002G177900 Phaseolus vulgaris HOM05D007799 ORTHO05D009854 1.3e-63 247.3 234 50.9
arahy.Tifrunner.gnm1.ann1.NZ6SRJ Arachis hypogaea HOM05D007799 ORTHO05D009854 2.2e-63 246.5 237 51.1
arahy.Tifrunner.gnm1.ann1.80ML42 Arachis hypogaea HOM05D007799 ORTHO05D009854 4.8e-63 245.4 237 51.1
MBI18_g11218_MAGBIO Magnolia biondii HOM05D007799 ORTHO05D009854 2.4e-62 243.0 234 48.7
Medtr8g079475 Medicago truncatula HOM05D007799 ORTHO05D009854 2.4e-62 243.0 240 49.6
ECA236G2997 Erigeron canadensis HOM05D007799 ORTHO05D009854 2.6e-61 239.6 219 52.1
HanXRQChr15g0482011 Helianthus annuus HOM05D007799 ORTHO05D009854 2.6e-61 239.6 238 46.2
HanXRQChr04g0116571 Helianthus annuus HOM05D007799 ORTHO05D009854 1.0e-60 237.7 237 47.7
Lalb_Chr13g0294011 Lupinus albus HOM05D007799 ORTHO05D009854 2.9e-60 236.1 238 46.2
vmacro03431 Vaccinium macrocarpon HOM05D007799 ORTHO05D009854 7.2e-59 231.5 245 51.0
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 2.1e-58 229.9 234 49.6
arahy.Tifrunner.gnm1.ann1.W0WEAA Arachis hypogaea HOM05D007799 ORTHO05D009854 2.1e-58 229.9 234 49.1
Actinidia32344 Actinidia chinensis HOM05D007799 ORTHO05D009854 5.3e-54 215.3 188 55.9
DCAR_007872 Daucus carota HOM05D007799 ORTHO05D009854 7.0e-54 214.9 251 45.8
Nn3g20329 Nelumbo nucifera HOM05D007799 ORTHO05D009854 9.1e-54 214.5 237 47.7
Dinv32213 Davidia involucrata HOM05D007799 ORTHO05D009854 3.5e-53 212.6 170 62.4
CsaV3_1G036880 Cucumis sativus L. HOM05D007799 ORTHO05D009854 2.9e-52 209.5 220 47.7
HPP92_026553 Vanilla planifolia HOM05D007799 ORTHO05D009854 3.8e-52 209.1 237 42.6
TAR624G0778 Trochodendron aralioides HOM05D007799 ORTHO05D009854 1.5e-51 207.2 169 58.0
ClCG03G006490 Citrullus lanatus HOM05D007799 ORTHO05D009854 4.2e-51 205.7 234 45.3
Sed0012400 Sechium edule HOM05D007799 ORTHO05D009854 4.0e-49 199.1 213 48.4
CDE12G0863 Ceratophyllum demersum HOM05D007799 ORTHO05D009854 1.1e-46 191.0 228 43.4
HPP92_028169 Vanilla planifolia HOM05D007799 ORTHO05D009854 1.8e-46 190.3 231 42.9
Phvul.006G168136 Phaseolus vulgaris HOM05D007799 ORTHO05D009854 1.6e-45 187.2 193 46.6
ATR1098G006 Amborella trichopoda HOM05D007799 ORTHO05D009854 1.9e-43 180.3 239 41.4
TPR.G9572 Trifolium pratense HOM05D007799 ORTHO05D009854 2.1e-42 176.8 181 50.8
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 1.4e-30 137.5 96 64.6
MELO3C035703.2 Cucumis melo HOM05D007799 ORTHO05D009854 3.5e-29 132.9 169 41.4
TPR.G18987 Trifolium pratense HOM05D007799 ORTHO05D009854 3.5e-21 106.3 80 55.0
HPP92_026526 Vanilla planifolia HOM05D007799 ORTHO05D009854 4.1e-14 82.8 100 38.0
SEGI_23668 Sequoiadendron giganteum HOM05D014396 ORTHO05D017117 9.9e-08 61.6 220 23.2
SEGI_23256 Sequoiadendron giganteum HOM05D014396 ORTHO05D017117 2.2e-07 60.5 206 24.3
SEGI_16642 Sequoiadendron giganteum HOM05D014396 ORTHO05D017117 7.1e-06 55.5 209 26.3


User provided reference genes

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