Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.3e-182 642.9 326 100.0
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.2e-178 629.8 326 97.5
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 2.5e-173 612.1 330 94.8
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 9.6e-173 610.1 321 95.3
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.4e-171 606.3 322 95.3
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.4e-171 605.5 320 95.3
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 1.6e-167 592.8 326 92.6
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.1e-144 516.9 327 77.7
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.8e-142 509.6 327 76.1
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.3e-142 509.2 326 75.2
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 9.7e-141 503.8 329 76.0
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.2e-140 502.7 329 75.7
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.4e-139 499.2 329 74.5
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 3.1e-139 498.8 326 75.5
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 3.1e-139 498.8 329 74.5
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 5.3e-139 498.0 327 73.1
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 9.1e-139 497.3 330 74.5
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 7.7e-138 494.2 326 74.8
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 3.8e-137 491.9 322 74.2
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.0e-134 483.8 327 70.6
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.7e-134 481.1 328 73.5
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 2.0e-133 479.6 326 72.1
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.0e-133 479.6 326 71.2
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 2.8e-132 475.7 327 71.6
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 8.2e-132 474.2 327 71.6
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 8.2e-132 474.2 328 71.3
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.4e-131 473.4 326 70.9
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 2.9e-129 465.7 324 71.6
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 2.9e-129 465.7 325 69.2
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 6.5e-129 464.5 328 67.4
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 8.5e-129 464.2 323 70.3
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.1e-128 463.8 324 70.4
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.5e-128 462.6 329 70.5
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 4.2e-128 461.8 324 69.8
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 5.5e-128 461.5 325 68.9
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 7.2e-128 461.1 328 70.1
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.2e-127 460.3 334 69.5
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 2.1e-127 459.5 323 70.0
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.7e-127 459.1 324 69.1
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.0e-126 457.2 323 68.4
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 5.2e-126 454.9 326 68.1
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 5.2e-126 454.9 324 70.1
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 8.8e-126 454.1 323 67.8
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.2e-125 453.8 325 68.3
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.2e-125 453.8 320 67.5
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.2e-125 453.8 329 68.4
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 1.5e-125 453.4 323 69.0
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.0e-125 453.0 323 67.8
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 3.4e-125 452.2 324 69.1
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 4.4e-125 451.8 326 68.4
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 5.7e-125 451.4 323 67.2
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 7.5e-125 451.1 322 67.7
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.7e-124 449.9 323 68.4
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.2e-124 449.5 330 67.0
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 3.7e-124 448.7 330 67.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.7e-124 448.7 330 67.0
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 3.7e-124 448.7 329 67.2
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 4.8e-124 448.4 322 68.0
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 6.3e-124 448.0 321 68.5
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 6.3e-124 448.0 323 68.4
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 6.3e-124 448.0 329 69.0
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 2.4e-123 446.0 322 65.8
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 5.4e-123 444.9 328 69.2
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 9.1e-123 444.1 326 66.0
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.6e-122 443.4 323 65.6
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 3.5e-122 442.2 326 66.6
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 3.5e-122 442.2 324 68.5
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 3.5e-122 442.2 320 67.2
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 4.5e-122 441.8 326 66.6
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 5.9e-122 441.4 326 65.0
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 3.8e-121 438.7 326 64.7
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.5e-120 436.0 320 66.2
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 6.1e-119 431.4 320 65.3
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 8.0e-119 431.0 320 65.9
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.8e-118 429.9 318 67.0
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.0e-118 429.1 323 65.6
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 3.0e-118 429.1 323 64.7
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 8.8e-118 427.6 308 67.9
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 9.8e-117 424.1 371 59.3
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 8.3e-116 421.0 307 67.8
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 7.0e-115 417.9 325 61.8
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.6e-114 416.8 323 63.2
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.6e-114 416.8 325 64.6
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 2.7e-114 416.0 325 64.3
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 7.8e-114 414.5 326 62.9
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 1.3e-113 413.7 325 62.5
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 1.7e-113 413.3 325 61.5
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 3.8e-113 412.1 416 55.5
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 6.6e-113 411.4 325 61.5
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.3e-112 409.1 323 61.6
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 4.3e-112 408.7 325 60.3
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.6e-111 406.8 325 60.0
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 2.8e-111 406.0 325 60.3
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 3.6e-111 405.6 323 61.3
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 3.6e-111 405.6 323 61.0
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 4.7e-111 405.2 325 61.2
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 2.3e-110 402.9 325 60.0
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 4.0e-110 402.1 323 62.5
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 8.9e-110 401.0 294 65.6
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 8.9e-110 401.0 279 70.6
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.8e-107 393.3 305 62.3
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 2.4e-107 392.9 322 62.7
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.2e-106 390.6 266 72.6
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.6e-106 390.2 258 73.3
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 4.6e-106 388.7 324 58.3
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 6.0e-106 388.3 324 58.3
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 8.6e-105 384.4 324 58.0
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.5e-104 383.6 545 41.5
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 2.5e-104 382.9 325 57.8
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 5.2e-102 375.2 378 55.3
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.9e-99 366.7 290 61.4
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 4.1e-99 365.5 323 55.7
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 2.3e-97 359.8 323 55.1
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.9e-96 356.7 319 57.7
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 9.5e-96 354.4 318 57.2
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 2.3e-94 349.7 685 35.0
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.2e-93 347.4 288 61.1
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.1e-91 340.9 323 54.8
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.6e-90 337.0 327 55.0
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 3.6e-87 325.9 265 60.4
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 4.4e-85 318.9 272 60.3
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 4.9e-84 315.5 222 68.9
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 9.2e-83 311.2 230 64.8
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.6e-82 310.5 310 51.0
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.3e-81 307.4 315 47.6
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 3.9e-81 305.8 315 48.6
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.9e-80 303.5 202 75.7
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 2.0e-77 293.5 256 57.8
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.0e-73 281.2 308 48.1
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 2.8e-71 273.1 176 75.6
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 3.2e-67 259.6 221 59.3
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 2.7e-50 203.4 301 37.5
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 6.3e-47 192.2 195 48.2
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 1.1e-30 138.3 96 71.9
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.0e-29 134.0 75 80.0
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 8.5e-28 128.6 99 59.6
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.9e-27 127.5 86 72.1
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.5e-27 125.9 95 62.1
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 9.4e-27 125.2 95 62.1
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 4.4e-24 116.3 121 52.1
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 7.4e-24 115.5 99 56.6
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.4e-22 111.3 330 28.8
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 8.5e-20 102.1 83 59.0
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 7.2e-19 99.0 88 56.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.3e-12 78.2 110 46.4
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 4.0e-09 66.6 113 42.5
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 4.4e-08 63.2 54 61.1
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 4.4e-08 63.2 54 61.1
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.4e-08 63.2 43 69.8
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 5.7e-08 62.8 54 61.1
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 7.5e-08 62.4 56 55.4
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 6.3e-07 59.3 70 47.1


User provided reference genes

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