Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 1.7e-97 359.4 187 100.0
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 1.4e-88 329.7 187 93.0
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 4.2e-88 328.2 187 92.5
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.6e-61 239.2 201 70.1
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 2.1e-55 219.5 191 68.1
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 4.8e-52 208.4 193 66.3
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 4.0e-46 188.7 188 59.0
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.6e-45 186.0 191 59.2
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 7.5e-45 184.5 187 58.8
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 9.8e-45 184.1 188 58.0
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 9.8e-45 184.1 188 58.0
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 9.8e-45 184.1 188 58.0
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.6e-42 176.8 188 57.4
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.6e-42 176.8 188 59.0
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 7.7e-42 174.5 175 61.7
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 8.6e-41 171.0 190 54.7
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 3.3e-40 169.1 189 54.0
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 5.6e-40 168.3 187 55.6
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 3.0e-38 162.5 189 56.6
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 3.0e-38 162.5 192 53.1
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 2.0e-37 159.8 191 51.3
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 4.4e-37 158.7 190 52.1
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 9.8e-37 157.5 189 52.9
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 1.7e-36 156.8 186 57.0
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 3.7e-36 155.6 182 56.0
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 8.3e-36 154.5 190 52.1
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 1.8e-35 153.3 191 53.9
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.4e-35 152.9 192 54.7
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 3.2e-35 152.5 188 52.7
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 4.1e-35 152.1 187 51.3
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 5.4e-35 151.8 194 52.1
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.2e-34 150.6 190 53.2
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.6e-34 150.2 190 53.7
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 2.0e-34 149.8 190 49.5
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 4.6e-34 148.7 187 51.9
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.6e-34 148.7 191 53.9
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 5.9e-34 148.3 185 52.4
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.0e-33 147.5 189 50.3
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.3e-33 147.1 191 52.9
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 2.3e-33 146.4 195 50.8
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 3.9e-33 145.6 190 52.1
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 5.0e-33 145.2 193 49.7
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 8.6e-33 144.4 190 50.0
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 1.9e-32 143.3 189 50.3
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.5e-32 142.9 190 52.6
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 3.3e-32 142.5 185 47.6
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 4.3e-32 142.1 190 47.9
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 9.5e-32 141.0 190 48.4
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 2.1e-31 139.8 192 49.0
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 3.6e-31 139.0 186 47.3
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 3.6e-31 139.0 192 46.9
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 4.7e-31 138.7 191 48.2
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 8.0e-31 137.9 187 47.6
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 8.0e-31 137.9 189 51.3
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.4e-30 137.1 189 50.3
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.8e-30 136.7 191 48.7
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 1.8e-30 136.7 191 48.2
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.3e-30 136.3 196 51.5
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 3.1e-30 136.0 190 47.4
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 4.0e-30 135.6 191 48.7
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 4.0e-30 135.6 190 47.4
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 1.2e-29 134.0 192 47.4
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 1.2e-29 134.0 190 47.9
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 1.2e-29 134.0 187 44.9
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 1.5e-29 133.7 186 46.2
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.0e-29 133.3 209 49.8
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 2.0e-29 133.3 193 49.2
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 2.0e-29 133.3 186 48.4
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 3.4e-29 132.5 187 49.7
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 4.4e-29 132.1 194 46.9
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 4.4e-29 132.1 190 49.5
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 1.7e-28 130.2 197 43.1
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 2.2e-28 129.8 186 44.1
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 4.9e-28 128.6 180 51.7
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 8.3e-28 127.9 184 45.7
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 1.4e-27 127.1 193 43.0
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 2.4e-27 126.3 195 48.2
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 4.1e-27 125.6 189 46.0
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 5.4e-27 125.2 189 46.0
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 1.2e-26 124.0 185 43.8
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 1.6e-26 123.6 189 46.0
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.0e-26 123.2 183 44.3
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.7e-26 122.9 191 44.5
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 1.0e-25 120.9 92 67.4
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 2.3e-25 119.8 100 68.0
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 1.1e-24 117.5 187 43.3
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 1.9e-24 116.7 187 44.4
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 3.3e-24 115.9 186 44.1
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 3.3e-24 115.9 190 45.3
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 4.3e-24 115.5 187 45.5
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 7.3e-24 114.8 190 43.7
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.3e-24 114.8 167 48.5
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 1.6e-23 113.6 191 44.0
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.6e-23 113.6 181 43.1
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 2.1e-23 113.2 187 43.9
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.1e-23 113.2 167 51.5
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 4.7e-23 112.1 186 42.5
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.1e-22 110.9 167 47.9
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 1.4e-22 110.5 189 47.6
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 8.9e-22 107.8 191 43.5
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 1.5e-21 107.1 198 39.9
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 1.5e-21 107.1 188 44.7
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 5.8e-21 105.1 184 45.7
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 5.8e-21 105.1 200 41.0
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 9.8e-21 104.4 189 40.7
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.3e-20 104.0 186 43.5
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 1.7e-20 103.6 75 69.3
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 2.2e-20 103.2 185 44.3
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 2.9e-20 102.8 187 43.3
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 1.1e-19 100.9 188 43.6
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 1.1e-19 100.9 188 43.6
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 1.1e-19 100.9 188 43.6
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 1.1e-19 100.9 188 45.2
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.1e-19 100.9 123 50.4
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.9e-19 100.1 178 39.9
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 1.6e-18 97.1 225 36.9
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 5.1e-17 92.0 82 64.6
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 1.9e-16 90.1 104 52.9
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 7.3e-16 88.2 172 40.1
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 8.1e-15 84.7 177 38.4
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 5.2e-14 82.0 158 39.9
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.2e-14 82.0 158 39.9
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.8e-14 81.6 92 52.2
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-13 80.9 166 41.0
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 2.0e-13 80.1 135 43.0
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 4.9e-12 75.5 142 40.1
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 1.9e-11 73.6 141 38.3
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 4.1e-11 72.4 186 33.9
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.1e-11 72.4 158 36.7
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 4.1e-11 72.4 193 31.1
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-10 70.9 103 42.7
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 2.7e-10 69.7 182 34.1
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 1.0e-09 67.8 114 40.4
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 2.1e-07 60.1 194 30.9
SHI05935 Sapria himalayana HOM05D004998 ORTHO05D006104 6.8e-06 55.1 36 69.4


User provided reference genes

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