Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002093 Solanum tuberosum HOM05D007324 ORTHO05D007884 2.1e-56 222.2 124 100.0
Sopen06g021310 Solanum pennellii HOM05D007324 ORTHO05D007884 2.3e-50 202.2 130 88.5
Solyc06g061110.2 Solanum lycopersicum HOM05D007324 ORTHO05D007884 3.3e-49 198.4 130 86.9
CAN.G201.20 Capsicum annuum HOM05D007324 ORTHO05D007884 2.7e-35 152.1 134 72.4
Peaxi162Scf00615g00021 Petunia axillaris HOM05D007324 ORTHO05D007884 2.7e-27 125.6 127 67.7
Ciclev10033018m.g Citrus clementina HOM05D007324 ORTHO05D007884 1.1e-23 113.6 143 51.7
Actinidia14815 Actinidia chinensis HOM05D007324 ORTHO05D007884 3.1e-23 112.1 120 55.8
PGR042G1904 Punica granatum HOM05D007324 ORTHO05D007884 5.3e-23 111.3 124 56.5
Atru.chr6.1738 Acer truncatum HOM05D007324 ORTHO05D007884 2.0e-22 109.4 123 53.7
CiPaw.11G092000 Carya illinoinensis HOM05D007324 ORTHO05D007884 1.0e-21 107.1 132 53.8
Lj2A242T77 Lonicera japonica HOM05D007324 ORTHO05D007884 1.7e-21 106.3 119 58.8
Eucgr.E00290 Eucalyptus grandis HOM05D007324 ORTHO05D007884 2.2e-21 105.9 134 50.7
Nitab4.5_0008428g0010 Nicotiana tabacum HOM05D007324 ORTHO05D007884 2.2e-21 105.9 129 60.5
CSS0048146 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 1.1e-20 103.6 124 51.6
Oeu047787.1 Olea europaea HOM05D007324 ORTHO05D007884 1.9e-20 102.8 115 54.8
HanXRQChr02g0043531 Helianthus annuus HOM05D007324 ORTHO05D007884 5.5e-20 101.3 122 54.1
Migut.E01386 Erythranthe guttata HOM05D007324 ORTHO05D007884 7.2e-20 100.9 116 50.0
Lsat_1_v5_gn_6_78560 Lactuca sativa HOM05D007324 ORTHO05D007884 1.6e-19 99.8 146 49.3
CSS0008196 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 2.1e-19 99.4 124 50.0
ECA240G0465 Erigeron canadensis HOM05D007324 ORTHO05D007884 2.7e-19 99.0 129 53.5
Glyma.17G155000 Glycine max HOM05D007324 ORTHO05D007884 3.6e-19 98.6 141 49.6
arahy.Tifrunner.gnm1.ann1.0E68DR Arachis hypogaea HOM05D007324 ORTHO05D007884 1.0e-18 97.1 118 53.4
arahy.Tifrunner.gnm1.ann1.69TWVD Arachis hypogaea HOM05D007324 ORTHO05D007884 1.0e-18 97.1 118 53.4
Glyma.05G112000 Glycine max HOM05D007324 ORTHO05D007884 3.0e-18 95.5 139 46.8
HanXRQChr03g0084061 Helianthus annuus HOM05D007324 ORTHO05D007884 5.2e-18 94.7 137 48.2
Psat4g078840 Pisum sativum HOM05D007324 ORTHO05D007884 9.8e-17 90.5 125 53.6
SGA_v2.0_scaffold144G35830 Striga asiatica HOM05D007324 ORTHO05D007884 4.8e-16 88.2 111 51.4
Medtr4g098480 Medicago truncatula HOM05D007324 ORTHO05D007884 6.3e-16 87.8 160 42.5
Haze_08257 Corylus avellana HOM05D007324 ORTHO05D007884 1.8e-15 86.3 101 57.4
Lalb_Chr16g0386011 Lupinus albus HOM05D007324 ORTHO05D007884 4.1e-15 85.1 114 50.0
Cc08_g02520 Coffea canephora HOM05D007324 ORTHO05D007884 1.2e-14 83.6 105 56.2
Phvul.003G230300 Phaseolus vulgaris HOM05D007324 ORTHO05D007884 1.2e-14 83.6 117 47.9
Peaxi162Scf00460g00044 Petunia axillaris HOM05D007324 ORTHO05D007884 2.0e-14 82.8 122 53.3
TPR.G29033 Trifolium pratense HOM05D007324 ORTHO05D007884 2.7e-14 82.4 117 54.7
PSO478G0244 Papaver somniferum HOM05D007324 ORTHO05D007884 1.7e-13 79.7 90 54.4
Gohir.A08G157700 Gossypium hirsutum HOM05D007324 ORTHO05D007884 2.9e-13 79.0 122 45.1
Gohir.D08G178000 Gossypium hirsutum HOM05D007324 ORTHO05D007884 5.0e-13 78.2 122 44.3
Gorai.004G186200 Gossypium raimondii HOM05D007324 ORTHO05D007884 6.5e-13 77.8 122 44.3
Ah.07g200240 Amaranthus hybridus HOM05D007324 ORTHO05D007884 8.5e-13 77.4 85 55.3
Cfa012419 Carpinus fangiana HOM05D007324 ORTHO05D007884 1.1e-12 77.0 117 49.6
PSO782G2910 Papaver somniferum HOM05D007324 ORTHO05D007884 1.5e-12 76.6 160 38.8
CsaV3_3G001850 Cucumis sativus L. HOM05D007324 ORTHO05D007884 1.9e-12 76.3 122 43.4
TWI81G0167 Tripterygium wilfordii HOM05D007324 ORTHO05D007884 2.5e-12 75.9 123 43.9
SalBow1G4617 Salvia bowleyana HOM05D007324 ORTHO05D007884 9.4e-12 73.9 121 43.0
SalBow8G4924 Salvia bowleyana HOM05D007324 ORTHO05D007884 9.4e-12 73.9 121 43.0
CSS0050429 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 1.6e-11 73.2 120 43.3
PSO782G1330 Papaver somniferum HOM05D007324 ORTHO05D007884 1.6e-11 73.2 88 52.3
Rhsim07G0125700 Rhododendron simsii HOM05D007324 ORTHO05D007884 2.1e-11 72.8 129 43.4
Aa31LG9G15320 Aethionema arabicum HOM05D011082 ORTHO05D007884 2.7e-11 72.4 81 56.8
Cpa.g.sc18.65 Carica papaya HOM05D007324 ORTHO05D007884 2.7e-11 72.4 114 44.7
MD06G1032700 Malus domestica HOM05D007324 ORTHO05D007884 2.7e-11 72.4 82 52.4
Actinidia09218 Actinidia chinensis HOM05D007324 ORTHO05D007884 4.7e-11 71.6 120 47.5
Ca_22071_v3 Cicer arietinum L. HOM05D007324 ORTHO05D007884 6.1e-11 71.2 120 46.7
Thhalv10009848m.g Eutrema salsugineum HOM05D007324 ORTHO05D007884 1.0e-10 70.5 114 43.0
BolC8t47935H Brassica oleracea HOM05D007324 ORTHO05D007884 1.8e-10 69.7 137 41.6
Lj4g0022663 Lotus japonicus HOM05D007324 ORTHO05D007884 1.8e-10 69.7 116 48.3
CDE12G0317 Ceratophyllum demersum HOM05D007324 ORTHO05D007884 2.3e-10 69.3 118 44.1
A08p09020 Brassica napus HOM05D007324 ORTHO05D007884 5.2e-10 68.2 103 46.6
BraA08t32903Z Brassica rapa HOM05D007324 ORTHO05D007884 5.2e-10 68.2 103 46.6
DCAR_008279 Daucus carota HOM05D007324 ORTHO05D007884 5.2e-10 68.2 124 45.2
Manes.15G168800 Manihot esculenta HOM05D007324 ORTHO05D007884 5.2e-10 68.2 74 55.4
Dinv28942 Davidia involucrata HOM05D007324 ORTHO05D007884 6.8e-10 67.8 118 45.8
Thecc.03G229800 Theobroma cacao HOM05D007324 ORTHO05D007884 8.8e-10 67.4 126 46.8
FvH4_5g21830 Fragaria vesca HOM05D007324 ORTHO05D007884 1.2e-09 67.0 86 52.3
MELO3C032260.2 Cucumis melo HOM05D007324 ORTHO05D007884 1.5e-09 66.6 134 39.6
DCAR_005623 Daucus carota HOM05D007324 ORTHO05D007884 1.5e-09 66.6 121 41.3
GSVIVG01013196001 Vitis vinifera HOM05D007324 ORTHO05D007884 2.6e-09 65.9 119 43.7
vmacro22242 Vaccinium macrocarpon HOM05D007324 ORTHO05D007884 3.4e-09 65.5 95 46.3
FAN04G2965 Fragaria x ananassa HOM05D007324 ORTHO05D007884 5.7e-09 64.7 86 51.2
Nn6g33613 Nelumbo nucifera HOM05D007324 ORTHO05D007884 7.5e-09 64.3 134 38.1
BcaB04g17953 Brassica carinata HOM05D007324 ORTHO05D007884 9.8e-09 63.9 122 40.2
FAN18G2652 Fragaria x ananassa HOM05D007324 ORTHO05D007884 9.8e-09 63.9 86 51.2
FAN08G0008 Fragaria x ananassa HOM05D007324 ORTHO05D007884 2.2e-08 62.8 86 51.2
CARHR129450 Cardamine hirsuta HOM05D011082 ORTHO05D007884 2.8e-08 62.4 113 43.4
AT2G35300 Arabidopsis thaliana HOM05D011082 ORTHO05D007884 3.7e-08 62.0 113 46.9
Thhalv10017485m.g Eutrema salsugineum HOM05D011082 ORTHO05D007884 3.7e-08 62.0 81 49.4
MBI04_g22943_MAGBIO Magnolia biondii HOM05D007324 ORTHO05D007884 3.7e-08 62.0 108 46.3
BcaB02g09441 Brassica carinata HOM05D011082 ORTHO05D007884 6.3e-08 61.2 113 46.0
Sp4g17510 Schrenkiella parvula HOM05D011082 ORTHO05D007884 8.3e-08 60.8 81 56.8
FvH4_5g21820 Fragaria vesca HOM05D031477 ORTHO05D007884 1.4e-07 60.1 115 40.0
ClCG10G001740 Citrullus lanatus HOM05D007324 ORTHO05D007884 2.4e-07 59.3 121 39.7
Potri.001G143700 Populus trichocarpa HOM05D007324 ORTHO05D007884 2.4e-07 59.3 130 39.2
CANSAT21G2393 Cannabis sativa HOM05D007324 ORTHO05D007884 4.1e-07 58.5 146 41.1
FAN13G0501 Fragaria x ananassa HOM05D007324 ORTHO05D007884 4.1e-07 58.5 139 35.3
EL10Ac5g12140 Beta vulgaris HOM05D028673 ORTHO05D031676 2.0e-06 56.2 151 34.4
BolC5t31929H Brassica oleracea HOM05D007324 ORTHO05D007884 2.0e-06 56.2 106 38.7
Hma1.2p1_0585F.1_g183650 Hydrangea macrophylla HOM05D007324 ORTHO05D007884 2.0e-06 56.2 94 47.9
BcaB07g32955 Brassica carinata HOM05D007324 ORTHO05D007884 2.7e-06 55.8 84 50.0
BraA05t19986Z Brassica rapa HOM05D011082 ORTHO05D007884 3.5e-06 55.5 81 51.9
COL.COLO4_17062 Corchorus olitorius HOM05D007324 ORTHO05D007884 3.5e-06 55.5 144 34.0
Prupe.5G039400 Prunus persica HOM05D007324 ORTHO05D007884 5.9e-06 54.7 47 66.0


User provided reference genes

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