Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001952 Solanum tuberosum HOM05D005907 ORTHO05D007033 3.7e-35 151.0 75 100.0
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 7.2e-31 136.7 73 91.8
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 7.4e-28 126.7 65 96.9
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 2.6e-25 118.2 75 77.3
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 7.7e-25 116.7 73 76.7
Nitab4.5_0006244g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 2.1e-22 108.6 68 73.5
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 1.0e-16 89.7 64 65.6
Nitab4.5_0009213g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 3.8e-16 87.8 64 64.1
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 1.8e-13 79.0 60 55.0
Nitab4.5_0000943g0070 Nicotiana tabacum HOM05D005907 ORTHO05D007033 4.0e-13 77.8 59 62.7
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 1.2e-12 76.3 60 60.0
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 4.4e-12 74.3 59 59.3
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 5.7e-12 73.9 66 51.5
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 7.5e-12 73.6 63 58.7
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 7.5e-12 73.6 66 51.5
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 1.3e-11 72.8 64 45.3
Haze_08422 Corylus avellana HOM05D005907 ORTHO05D007033 2.2e-11 72.0 58 56.9
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 3.7e-11 71.2 58 56.9
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 4.8e-11 70.9 59 55.9
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 4.8e-11 70.9 59 55.9
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 6.3e-11 70.5 59 55.9
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 8.3e-11 70.1 51 62.7
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 1.1e-10 69.7 60 50.0
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 1.1e-10 69.7 66 47.0
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 1.4e-10 69.3 68 52.9
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.8e-10 68.9 59 52.5
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 2.4e-10 68.6 66 45.5
EL10Ac5g12591 Beta vulgaris HOM05D005907 ORTHO05D007033 3.1e-10 68.2 59 47.5
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 3.1e-10 68.2 60 55.0
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 4.1e-10 67.8 66 48.5
Manes.15G184500 Manihot esculenta HOM05D005907 ORTHO05D007033 4.1e-10 67.8 66 47.0
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 4.1e-10 67.8 66 45.5
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 5.3e-10 67.4 54 53.7
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 7.0e-10 67.0 66 48.5
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 1.2e-09 66.2 53 56.6
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 2.0e-09 65.5 66 43.9
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 2.0e-09 65.5 53 54.7
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 2.0e-09 65.5 59 50.8
Dinv37434 Davidia involucrata HOM05D005907 ORTHO05D007033 2.7e-09 65.1 64 50.0
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 2.7e-09 65.1 66 43.9
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 2.7e-09 65.1 72 41.7
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 3.5e-09 64.7 54 51.9
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 3.5e-09 64.7 64 50.0
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 3.5e-09 64.7 61 47.5
SGA_v2.0_scaffold121G33056 Striga asiatica HOM05D005907 ORTHO05D007033 3.5e-09 64.7 59 49.2
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 4.5e-09 64.3 61 49.2
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 5.9e-09 63.9 64 50.0
PSO339G2078 Papaver somniferum HOM05D005907 ORTHO05D007033 5.9e-09 63.9 58 46.6
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 7.7e-09 63.5 51 52.9
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 7.7e-09 63.5 51 52.9
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 7.7e-09 63.5 54 51.9
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 1.0e-08 63.2 66 43.9
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 1.0e-08 63.2 66 43.9
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 1.0e-08 63.2 69 44.9
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 1.7e-08 62.4 51 58.8
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 2.2e-08 62.0 54 46.3
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 2.2e-08 62.0 62 38.7
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 2.2e-08 62.0 64 48.4
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 2.9e-08 61.6 62 46.8
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 3.8e-08 61.2 62 38.7
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 3.8e-08 61.2 51 51.0
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 3.8e-08 61.2 66 42.4
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 5.0e-08 60.8 54 46.3
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 5.0e-08 60.8 66 42.4
Eucgr.E01152 Eucalyptus grandis HOM05D005907 ORTHO05D007033 5.0e-08 60.8 59 42.4
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 5.0e-08 60.8 64 43.8
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 5.0e-08 60.8 66 43.9
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 6.5e-08 60.5 66 39.4
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 6.5e-08 60.5 58 43.1
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 8.5e-08 60.1 64 46.9
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 1.1e-07 59.7 68 38.2
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.5e-07 59.3 50 48.0
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 1.5e-07 59.3 50 48.0
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 1.5e-07 59.3 59 44.1
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 2.5e-07 58.5 63 44.4
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 3.2e-07 58.2 65 40.0
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 3.2e-07 58.2 58 44.8
Phvul.003G278300 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 3.2e-07 58.2 70 41.4
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 5.5e-07 57.4 48 56.2
unitig_37.g12906 Utricularia gibba HOM05D005907 ORTHO05D007033 5.5e-07 57.4 50 48.0
Sp4g03880 Schrenkiella parvula HOM05D005907 ORTHO05D007033 7.2e-07 57.0 65 38.5
ATR0568G210 Amborella trichopoda HOM05D005907 ORTHO05D007033 9.4e-07 56.6 48 50.0
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 9.4e-07 56.6 50 48.0
AT4G19370 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 1.6e-06 55.8 64 37.5
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 1.6e-06 55.8 58 41.4
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 1.6e-06 55.8 50 48.0
AT1G31720 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 2.7e-06 55.1 63 39.7
Psat4g109120 Pisum sativum HOM05D005907 ORTHO05D007033 2.7e-06 55.1 64 45.3
Aa31LG2G14390 Aethionema arabicum HOM05D005907 ORTHO05D007033 3.6e-06 54.7 51 47.1
BcaC09g51418 Brassica carinata HOM05D005907 ORTHO05D007033 3.6e-06 54.7 63 38.1
A01p11320 Brassica napus HOM05D005907 ORTHO05D007033 3.6e-06 54.7 63 38.1
C01p13330 Brassica napus HOM05D005907 ORTHO05D007033 3.6e-06 54.7 63 38.1
BolC1t01308H Brassica oleracea HOM05D005907 ORTHO05D007033 3.6e-06 54.7 63 38.1
BraA01t01076Z Brassica rapa HOM05D005907 ORTHO05D007033 3.6e-06 54.7 63 38.1
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 3.6e-06 54.7 54 42.6
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 3.6e-06 54.7 58 39.7
Sp7g17980 Schrenkiella parvula HOM05D005907 ORTHO05D007033 3.6e-06 54.7 60 40.0
Carub.0007s2186 Capsella rubella HOM05D005907 ORTHO05D007033 4.7e-06 54.3 64 35.9
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 6.1e-06 53.9 66 34.8
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 6.1e-06 53.9 66 34.8
Sc07g0008040 Simmondsia chinensis HOM05D005907 ORTHO05D007033 6.1e-06 53.9 43 48.8
Zm00001eb251950 Zea mays HOM05D005907 ORTHO05D007033 8.0e-06 53.5 51 45.1


User provided reference genes

Program Settings