Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 4.0e-27 124.0 62 100.0
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 7.8e-23 109.8 62 90.3
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 1.2e-20 102.4 59 84.7
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 2.6e-18 94.7 56 82.1
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 2.6e-18 94.7 56 82.1
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 2.6e-18 94.7 56 82.1
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 1.3e-17 92.4 57 80.7
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 1.7e-17 92.0 57 78.9
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 4.9e-17 90.5 57 78.9
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 8.3e-17 89.7 53 83.0
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 1.1e-16 89.4 57 77.2
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 1.1e-16 89.4 57 77.2
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 4.1e-16 87.4 58 77.6
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 5.4e-16 87.0 57 75.4
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 5.4e-16 87.0 57 75.4
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 5.4e-16 87.0 59 71.2
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 9.2e-16 86.3 53 83.0
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 9.2e-16 86.3 59 67.8
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 1.2e-15 85.9 54 75.9
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 2.0e-15 85.1 53 81.1
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.0e-15 85.1 59 67.8
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 2.7e-15 84.7 51 78.4
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 2.7e-15 84.7 54 74.1
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 4.6e-15 84.0 54 75.9
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 6.0e-15 83.6 57 71.9
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 6.0e-15 83.6 57 71.9
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 6.0e-15 83.6 57 70.2
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 7.8e-15 83.2 51 80.4
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 1.0e-14 82.8 62 69.4
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.3e-14 82.4 57 71.9
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 1.3e-14 82.4 61 68.9
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.3e-14 82.4 50 84.0
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.3e-14 82.4 51 78.4
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.7e-14 82.0 51 74.5
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.7e-14 82.0 51 74.5
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 2.3e-14 81.6 61 68.9
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 2.3e-14 81.6 55 72.7
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 5.0e-14 80.5 59 69.5
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 5.0e-14 80.5 59 67.8
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 5.0e-14 80.5 56 69.6
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 6.6e-14 80.1 58 70.7
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 8.6e-14 79.7 55 72.7
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.1e-13 79.3 53 77.4
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.5e-13 79.0 51 74.5
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 1.5e-13 79.0 59 66.1
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 1.5e-13 79.0 53 73.6
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 1.9e-13 78.6 57 68.4
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 2.5e-13 78.2 60 68.3
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 2.5e-13 78.2 56 67.9
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 2.5e-13 78.2 60 66.7
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 2.5e-13 78.2 60 66.7
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 3.3e-13 77.8 58 67.2
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 3.3e-13 77.8 59 66.1
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 3.3e-13 77.8 53 73.6
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 4.3e-13 77.4 51 72.5
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 4.3e-13 77.4 59 67.8
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 4.3e-13 77.4 51 72.5
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 5.6e-13 77.0 59 62.7
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 7.3e-13 76.6 41 90.2
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 7.3e-13 76.6 55 67.3
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 1.2e-12 75.9 56 69.6
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.2e-12 75.9 49 73.5
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 2.8e-12 74.7 59 62.7
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 3.6e-12 74.3 56 60.7
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 4.7e-12 73.9 59 59.3
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 4.7e-12 73.9 59 61.0
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 4.7e-12 73.9 51 70.6
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 4.7e-12 73.9 53 69.8
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 4.7e-12 73.9 59 61.0
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 6.2e-12 73.6 57 68.4
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 8.1e-12 73.2 51 72.5
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 1.1e-11 72.8 48 70.8
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 1.1e-11 72.8 45 77.8
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 1.4e-11 72.4 59 61.0
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 3.1e-11 71.2 45 73.3
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 4.0e-11 70.9 59 61.0
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 6.8e-11 70.1 56 62.5
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.2e-10 69.3 59 55.9
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.5e-10 68.9 59 55.9
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 4.4e-10 67.4 41 75.6
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 7.5e-10 66.6 92 45.7
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 9.8e-10 66.2 37 83.8
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 9.8e-10 66.2 54 57.4
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 1.7e-09 65.5 76 48.7
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 2.2e-09 65.1 61 57.4
SHI07594 Sapria himalayana HOM05D007758 ORTHO05D009788 2.3e-06 55.1 35 77.1
SGA_v2.0_scaffold7G03834 Striga asiatica HOM05D007758 ORTHO05D009788 5.1e-06 53.9 33 78.8


User provided reference genes

Program Settings