Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001811 Solanum tuberosum HOM05D000804 ORTHO05D005389 3.2e-43 177.9 85 100.0
Solyc01g081050.4 Solanum lycopersicum HOM05D000804 ORTHO05D005389 4.8e-39 164.1 85 92.9
Peaxi162Scf00592g00212 Petunia axillaris HOM05D000804 ORTHO05D005389 5.8e-37 157.1 82 89.0
Nitab4.5_0003594g0020 Nicotiana tabacum HOM05D000804 ORTHO05D005389 7.6e-37 156.8 85 84.7
CAN.G700.21 Capsicum annuum HOM05D000804 ORTHO05D005389 4.9e-36 154.1 85 84.7
Nitab4.5_0000592g0250 Nicotiana tabacum HOM05D000804 ORTHO05D005389 1.3e-33 146.0 78 87.2
Sabra19G0054400 Salix brachista HOM05D000804 ORTHO05D005389 2.4e-22 108.6 74 68.9
Potri.019G043800 Populus trichocarpa HOM05D000804 ORTHO05D005389 4.0e-22 107.8 75 68.0
Atru.chr2.1715 Acer truncatum HOM05D000804 ORTHO05D005389 1.0e-20 103.2 72 66.7
Cc02_g26260 Coffea canephora HOM05D000804 ORTHO05D005389 1.7e-20 102.4 79 62.0
Cfa003676 Carpinus fangiana HOM05D000804 ORTHO05D005389 2.2e-20 102.1 78 64.1
Ciclev10030562m.g Citrus clementina HOM05D000804 ORTHO05D005389 2.9e-20 101.7 80 63.8
Lalb_Chr07g0189561 Lupinus albus HOM05D000804 ORTHO05D005389 3.8e-20 101.3 79 59.5
Nn1g09657 Nelumbo nucifera HOM05D000804 ORTHO05D005389 4.9e-20 100.9 86 55.8
Manes.09G131500 Manihot esculenta HOM05D000804 ORTHO05D005389 8.4e-20 100.1 76 60.5
VMungo0331G1063 Vigna mungo HOM05D000804 ORTHO05D005389 8.4e-20 100.1 79 59.5
Ca_23822_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 1.1e-19 99.8 79 60.8
Ca_23827_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 1.1e-19 99.8 79 60.8
Haze_15812 Corylus avellana HOM05D000804 ORTHO05D005389 1.1e-19 99.8 78 64.1
DCAR_029554 Daucus carota HOM05D000804 ORTHO05D005389 1.4e-19 99.4 73 65.8
Lj3g0026096 Lotus japonicus HOM05D000804 ORTHO05D005389 1.9e-19 99.0 79 58.2
Glyma.03G021000 Glycine max HOM05D000804 ORTHO05D005389 2.5e-19 98.6 79 62.0
CSS0037336 Camellia sinensis var. sinensis HOM05D000804 ORTHO05D005389 3.2e-19 98.2 76 59.2
Sed0024810 Sechium edule HOM05D000804 ORTHO05D005389 3.2e-19 98.2 73 63.0
EL10Ac5g10540 Beta vulgaris HOM05D000804 ORTHO05D005389 4.2e-19 97.8 78 57.7
TWI32G1345 Tripterygium wilfordii HOM05D000804 ORTHO05D005389 4.2e-19 97.8 76 65.8
MD07G1077300 Malus domestica HOM05D000804 ORTHO05D005389 7.1e-19 97.1 74 67.6
Prupe.2G098200 Prunus persica HOM05D000804 ORTHO05D005389 7.1e-19 97.1 75 62.7
RcHm_v2.0_Chr1g0337111 Rosa chinensis HOM05D000804 ORTHO05D005389 7.1e-19 97.1 74 62.2
GSVIVG01011337001 Vitis vinifera HOM05D000804 ORTHO05D005389 7.1e-19 97.1 79 60.8
Medtr8g035620 Medicago truncatula HOM05D000804 ORTHO05D005389 9.3e-19 96.7 79 58.2
Migut.O00426 Erythranthe guttata HOM05D000804 ORTHO05D005389 1.2e-18 96.3 76 60.5
RcHm_v2.0_Chr1g0337141 Rosa chinensis HOM05D000804 ORTHO05D005389 1.2e-18 96.3 74 60.8
Migut.N01690 Erythranthe guttata HOM05D000804 ORTHO05D005389 1.6e-18 95.9 79 59.5
SalBow4G2892 Salvia bowleyana HOM05D000804 ORTHO05D005389 1.6e-18 95.9 68 66.2
Aqoxy3G02136 Aquilegia oxysepala HOM05D000804 ORTHO05D005389 2.1e-18 95.5 83 50.6
PSO063G5197 Papaver somniferum HOM05D000804 ORTHO05D005389 2.1e-18 95.5 77 51.9
QL04p052206 Quercus lobata HOM05D000804 ORTHO05D005389 2.1e-18 95.5 72 65.3
TPR.G30883 Trifolium pratense HOM05D000804 ORTHO05D005389 2.1e-18 95.5 70 58.6
CANSAT56G1528 Cannabis sativa HOM05D000804 ORTHO05D005389 2.7e-18 95.1 75 65.3
Phvul.010G085900 Phaseolus vulgaris HOM05D000804 ORTHO05D005389 2.7e-18 95.1 79 58.2
PGR083G1621 Punica granatum HOM05D000804 ORTHO05D005389 2.7e-18 95.1 73 56.2
Rhsim01G0134900 Rhododendron simsii HOM05D000804 ORTHO05D005389 3.5e-18 94.7 78 56.4
Psat4g196240 Pisum sativum HOM05D000804 ORTHO05D005389 4.6e-18 94.4 79 55.7
ClCG06G008140 Citrullus lanatus HOM05D000804 ORTHO05D005389 6.0e-18 94.0 74 62.2
Thecc.05G230500 Theobroma cacao HOM05D000804 ORTHO05D005389 6.0e-18 94.0 72 61.1
vmacro21110 Vaccinium macrocarpon HOM05D000804 ORTHO05D005389 7.9e-18 93.6 73 57.5
THA.LOC104825451 Tarenaya hassleriana HOM05D000804 ORTHO05D005389 1.0e-17 93.2 73 63.0
unitig_22.g5901 Utricularia gibba HOM05D000804 ORTHO05D005389 1.3e-17 92.8 80 58.8
MELO3C020372.2 Cucumis melo HOM05D000804 ORTHO05D005389 1.8e-17 92.4 69 63.8
CsaV3_2G011020 Cucumis sativus L. HOM05D000804 ORTHO05D005389 1.8e-17 92.4 69 62.3
AUR62017553 Chenopodium quinoa HOM05D000804 ORTHO05D005389 2.3e-17 92.0 72 58.3
SGA_v2.0_scaffold4G02207 Striga asiatica HOM05D000804 ORTHO05D005389 3.0e-17 91.7 79 55.7
arahy.Tifrunner.gnm1.ann1.A8SNFY Arachis hypogaea HOM05D000804 ORTHO05D005389 3.9e-17 91.3 76 57.9
MSTRG.4983 Avicennia marina HOM05D000804 ORTHO05D005389 5.1e-17 90.9 76 57.9
FvH4_7g07130 Fragaria vesca HOM05D000804 ORTHO05D005389 6.7e-17 90.5 67 68.7
FAN06G2879 Fragaria x ananassa HOM05D000804 ORTHO05D005389 6.7e-17 90.5 67 68.7
FAN10G1244 Fragaria x ananassa HOM05D000804 ORTHO05D005389 6.7e-17 90.5 67 68.7
Ah.02g110870 Amaranthus hybridus HOM05D000804 ORTHO05D005389 8.7e-17 90.1 74 51.4
AL7G44840 Arabidopsis lyrata HOM05D000804 ORTHO05D005389 8.7e-17 90.1 71 63.4
Cpa.g.sc73.84 Carica papaya HOM05D000804 ORTHO05D005389 8.7e-17 90.1 72 55.6
AUR62028598 Chenopodium quinoa HOM05D000804 ORTHO05D005389 1.1e-16 89.7 72 55.6
Duzib128G1116 Durio zibethinus HOM05D000804 ORTHO05D005389 1.5e-16 89.4 75 56.0
Lj7C558T5 Lonicera japonica HOM05D000804 ORTHO05D005389 1.5e-16 89.4 69 59.4
AT5G35930 Arabidopsis thaliana HOM05D000804 ORTHO05D005389 1.9e-16 89.0 71 60.6
BcaB04g18016 Brassica carinata HOM05D000804 ORTHO05D005389 2.5e-16 88.6 71 60.6
A08p09490 Brassica napus HOM05D000804 ORTHO05D005389 2.5e-16 88.6 71 60.6
BraA08t32948Z Brassica rapa HOM05D000804 ORTHO05D005389 2.5e-16 88.6 71 60.6
BolC8t48020H Brassica oleracea HOM05D000804 ORTHO05D005389 3.3e-16 88.2 72 59.7
Oeu024957.1 Olea europaea HOM05D000804 ORTHO05D005389 4.3e-16 87.8 78 53.8
Sp7g06220 Schrenkiella parvula HOM05D000804 ORTHO05D005389 4.3e-16 87.8 70 62.9
Aa31LG9G17950 Aethionema arabicum HOM05D000804 ORTHO05D005389 5.7e-16 87.4 70 62.9
Thhalv10003545m.g Eutrema salsugineum HOM05D000804 ORTHO05D005389 7.4e-16 87.0 71 60.6
Carub.0007s3171 Capsella rubella HOM05D000804 ORTHO05D005389 9.7e-16 86.7 70 62.9
arahy.Tifrunner.gnm1.ann1.00QVML Arachis hypogaea HOM05D000804 ORTHO05D005389 1.3e-15 86.3 76 53.9
Gohir.A13G075600 Gossypium hirsutum HOM05D000804 ORTHO05D005389 1.3e-15 86.3 77 53.2
Gohir.D13G099900 Gossypium hirsutum HOM05D000804 ORTHO05D005389 1.6e-15 85.9 77 53.2
Gorai.013G111900 Gossypium raimondii HOM05D000804 ORTHO05D005389 1.6e-15 85.9 77 53.2
BcaB04g18018 Brassica carinata HOM05D000804 ORTHO05D005389 2.8e-15 85.1 72 58.3
BcaC07g37648 Brassica carinata HOM05D000804 ORTHO05D005389 2.8e-15 85.1 72 58.3
HanXRQChr01g0020521 Helianthus annuus HOM05D000804 ORTHO05D005389 4.8e-15 84.3 71 56.3
FAN01G0713 Fragaria x ananassa HOM05D000804 ORTHO05D005389 6.3e-15 84.0 75 61.3
HPP92_005377 Vanilla planifolia HOM05D000804 ORTHO05D005389 1.4e-14 82.8 77 55.8
ATR0829G026 Amborella trichopoda HOM05D000804 ORTHO05D005389 1.8e-14 82.4 73 52.1
Sc17g0001320 Simmondsia chinensis HOM05D000804 ORTHO05D005389 1.8e-14 82.4 71 50.7
Actinidia21597 Actinidia chinensis HOM05D000804 ORTHO05D005389 2.4e-14 82.0 79 51.9
Os06g0111600 Oryza sativa ssp. japonica HOM05D000804 ORTHO05D005389 4.1e-14 81.3 74 48.6
CDE12G0592 Ceratophyllum demersum HOM05D000804 ORTHO05D005389 1.4e-09 66.2 85 42.4
Zm00001eb378990 Zea mays HOM05D000804 ORTHO05D005389 8.8e-09 63.5 103 33.0
SMO145G0113 Selaginella moellendorffii HOM05D000804 ORTHO05D005389 1.5e-08 62.8 76 40.8
CBR_g4474 Chara braunii HOM05D000804 ORTHO05D005389 4.3e-08 61.2 66 40.9


User provided reference genes

Program Settings