Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 3.5e-94 348.2 168 100.0
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 7.8e-94 347.1 168 99.4
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 6.6e-85 317.4 168 92.3
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 6.6e-85 317.4 168 92.3
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 5.7e-68 261.2 152 80.3
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.3e-60 235.0 166 72.9
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 6.5e-56 221.1 145 73.8
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 1.4e-50 203.4 147 69.4
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 4.2e-47 191.8 165 58.8
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 9.7e-44 180.6 159 59.7
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 1.7e-43 179.9 153 60.8
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 6.3e-43 177.9 128 64.8
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 1.7e-32 143.3 149 47.7
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 6.5e-32 141.4 99 69.7
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 1.1e-31 140.6 141 49.6
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 4.2e-31 138.7 135 50.4
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 1.6e-30 136.7 127 55.9
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 3.6e-30 135.6 137 48.2
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 3.6e-30 135.6 125 52.0
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.6e-30 135.6 125 52.0
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 4.7e-30 135.2 141 48.9
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 6.1e-30 134.8 137 49.6
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 3.0e-29 132.5 151 45.0
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 4.0e-29 132.1 135 47.4
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.2e-29 131.7 155 45.2
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 6.8e-29 131.3 152 46.7
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 6.8e-29 131.3 152 46.7
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 1.5e-28 130.2 99 65.7
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.5e-28 130.2 152 46.1
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 3.4e-28 129.0 135 46.7
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 4.4e-28 128.6 142 45.8
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 4.4e-28 128.6 136 47.1
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 4.4e-28 128.6 119 53.8
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 5.7e-28 128.3 136 52.9
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 7.5e-28 127.9 136 47.8
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 9.8e-28 127.5 136 52.2
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 9.8e-28 127.5 138 47.1
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.7e-27 125.6 99 60.6
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 6.3e-27 124.8 140 47.1
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.1e-26 124.0 145 44.1
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.4e-26 123.6 155 45.8
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 1.4e-26 123.6 140 44.3
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 3.1e-26 122.5 167 40.1
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 5.4e-26 121.7 143 46.9
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 7.0e-26 121.3 135 46.7
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 9.1e-26 120.9 141 47.5
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 1.6e-25 120.2 135 48.9
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.0e-25 119.8 136 50.7
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.7e-25 119.4 162 42.6
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 3.5e-25 119.0 141 43.3
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 7.7e-25 117.9 149 43.6
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 1.7e-24 116.7 155 43.2
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.2e-24 116.3 158 40.5
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.2e-24 116.3 158 40.5
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 2.9e-24 115.9 136 47.1
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 5.0e-24 115.2 140 44.3
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 1.1e-23 114.0 124 45.2
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 1.1e-23 114.0 122 45.1
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 2.5e-23 112.8 140 43.6
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 4.2e-23 112.1 145 46.2
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 5.5e-23 111.7 137 46.7
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 9.4e-23 110.9 136 43.4
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.2e-22 110.5 133 45.1
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 1.2e-22 110.5 163 42.9
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 2.1e-22 109.8 122 47.5
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 3.6e-22 109.0 130 44.6
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 4.7e-22 108.6 127 44.9
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 6.1e-22 108.2 129 46.5
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 6.1e-22 108.2 141 44.0
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 8.0e-22 107.8 135 42.2
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.3e-21 106.3 120 46.7
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 8.8e-21 104.4 134 41.8
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 2.0e-20 103.2 158 38.0
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.6e-20 102.8 131 44.3
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.4e-20 102.1 134 41.8
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 4.4e-20 102.1 166 39.2
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 1.3e-19 100.5 165 35.8
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 1.7e-19 100.1 132 40.2
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 1.7e-19 100.1 131 38.2
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 1.7e-19 100.1 129 41.1
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 2.8e-19 99.4 135 43.0
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.8e-19 99.4 125 44.8
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 3.7e-19 99.0 109 48.6
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 1.1e-18 97.4 136 41.9
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 1.1e-18 97.4 100 50.0
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 3.1e-18 95.9 128 43.0
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.1e-18 95.5 132 38.6
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.1e-18 95.5 119 43.7
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 4.1e-18 95.5 133 38.3
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 5.4e-18 95.1 137 41.6
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.4e-18 95.1 130 40.8
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 7.0e-18 94.7 127 40.2
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 9.2e-18 94.4 166 34.9
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 9.2e-18 94.4 174 37.9
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.2e-17 94.0 132 37.9
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 1.2e-17 94.0 152 38.8
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 1.6e-17 93.6 135 40.0
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 1.6e-17 93.6 135 40.0
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 1.6e-17 93.6 134 41.0
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 2.0e-17 93.2 127 41.7
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 3.5e-17 92.4 134 41.0
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 1.3e-16 90.5 111 47.7
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 2.9e-16 89.4 116 45.7
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 2.9e-16 89.4 135 39.3
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 3.8e-16 89.0 150 38.7
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 6.6e-16 88.2 111 45.9
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 6.6e-16 88.2 135 37.0
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 8.6e-16 87.8 135 39.3
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 1.1e-15 87.4 165 33.9
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.3e-15 85.9 58 63.8
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 4.3e-15 85.5 123 41.5
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 3.6e-14 82.4 138 37.0
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 4.7e-14 82.0 100 50.0
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 6.1e-14 81.6 108 41.7
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 6.1e-14 81.6 130 35.4
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 6.1e-14 81.6 138 35.5
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 6.1e-14 81.6 129 39.5
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 1.0e-13 80.9 101 46.5
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.4e-13 80.5 129 38.8
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 2.3e-13 79.7 137 35.0
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 2.3e-13 79.7 128 37.5
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 8.9e-13 77.8 149 34.2
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.0e-12 76.6 157 32.5
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 2.0e-12 76.6 121 33.9
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 5.7e-12 75.1 93 43.0
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 5.7e-12 75.1 101 43.6
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 7.5e-12 74.7 103 40.8
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 2.9e-11 72.8 127 35.4
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 2.9e-11 72.8 83 45.8
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.9e-11 72.8 118 39.0
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.9e-11 72.8 118 39.0
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 1.8e-10 70.1 134 36.6
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.2e-09 67.4 65 49.2
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.0e-09 66.6 128 35.9
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.9e-09 65.1 105 37.1
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 1.0e-08 64.3 120 35.0
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 3.3e-07 59.3 84 36.9
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.3e-07 58.9 128 28.9
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 7.3e-07 58.2 89 33.7
Aqoxy5G02746 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 9.5e-07 57.8 66 43.9
Nitab4.5_0006031g0060 Nicotiana tabacum HOM05D010896 ORTHO05D011162 1.6e-06 57.0 81 37.0
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 2.1e-06 56.6 48 52.1
Aqoxy3G01422 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 3.6e-06 55.8 100 37.0
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 3.6e-06 55.8 78 39.7
AL7G18270 Arabidopsis lyrata HOM05D000823 ORTHO05D000088 6.2e-06 55.1 83 39.8


User provided reference genes

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